These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence [ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG] [+] EMBL CD081975 [ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG] [-] EMBL CD187243 [ CTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAGATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGC ] consensusID : consensus_6712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG-AATTTATTTCTT] [+] EMBL CD080482 [GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG AATTTATTTCT ] [-] EMBL CD074393 [ GATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCCCCATGGTCCCCGCTTACTCCTTCGTTCTTTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTTTTAATCAGTGATACTTAATAATATAACTTTTTTTTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTTTTTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTTTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAAAGAAAGATAACATGATATGTAATATGTGCATTAAT GTTGTAATTTATTTtct] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6712#0 ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTC 60 consensus_6712#1 -----------------------------------------------------------G 1 consensus_6712#0 CGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 120 consensus_6712#1 AGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 61 * ** ** * * * * ************************************** consensus_6712#0 AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 180 consensus_6712#1 AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 121 ************************************************************ consensus_6712#0 TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 240 consensus_6712#1 TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 181 ************************************************************ consensus_6712#0 CGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATT 300 consensus_6712#1 CGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATT 241 ************************ *********************************** consensus_6712#0 TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 360 consensus_6712#1 TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 301 ************************************************************ consensus_6712#0 ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 420 consensus_6712#1 ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 361 ************************************************************ consensus_6712#0 TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 480 consensus_6712#1 TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 421 ************************************************************ consensus_6712#0 AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 540 consensus_6712#1 AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 481 ************************************************************ consensus_6712#0 TATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCT 600 consensus_6712#1 TATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCT 541 ************** ******************************* ************* consensus_6712#0 AAAGTTAGTTCGCTTTTTCTTCCTGTA-TAACACAGTTGTATTCGGAATTACTCTNTCTT 659 consensus_6712#1 AAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTT 601 *************************** ******************************** consensus_6712#0 AATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTG-ATATCATAACGTTACATG 718 consensus_6712#1 AATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATG 661 ************** ***************** ******** ****************** consensus_6712#0 TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATA-CATGATATGTAATATGTG 777 consensus_6712#1 TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTG 721 ***************************************** ****************** consensus_6712#0 CATTAATGGTGNAATT-ATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGG 836 consensus_6712#1 CATTAATGGTTGAATTTATTTCTT------------------------------------ 745 ********** **** ** **** consensus_6712#0 GATCACGTAGTGATATGAATAGTNATACTTAGGCTANG 874 consensus_6712#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||