|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence
[ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG]
[+] EMBL CD081975 [ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG]
[-] EMBL CD187243 [ CTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAGATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGC ]
consensusID : consensus_6712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence
[GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG-AATTTATTTCTT]
[+] EMBL CD080482 [GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG AATTTATTTCT ]
[-] EMBL CD074393 [ GATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCCCCATGGTCCCCGCTTACTCCTTCGTTCTTTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTTTTAATCAGTGATACTTAATAATATAACTTTTTTTTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTTTTTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTTTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAAAGAAAGATAACATGATATGTAATATGTGCATTAAT GTTGTAATTTATTTtct]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6712#0 ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTC 60
consensus_6712#1 -----------------------------------------------------------G 1
consensus_6712#0 CGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 120
consensus_6712#1 AGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 61
* ** ** * * * * **************************************
consensus_6712#0 AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 180
consensus_6712#1 AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 121
************************************************************
consensus_6712#0 TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 240
consensus_6712#1 TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 181
************************************************************
consensus_6712#0 CGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATT 300
consensus_6712#1 CGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATT 241
************************ ***********************************
consensus_6712#0 TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 360
consensus_6712#1 TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 301
************************************************************
consensus_6712#0 ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 420
consensus_6712#1 ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 361
************************************************************
consensus_6712#0 TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 480
consensus_6712#1 TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 421
************************************************************
consensus_6712#0 AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 540
consensus_6712#1 AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 481
************************************************************
consensus_6712#0 TATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCT 600
consensus_6712#1 TATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCT 541
************** ******************************* *************
consensus_6712#0 AAAGTTAGTTCGCTTTTTCTTCCTGTA-TAACACAGTTGTATTCGGAATTACTCTNTCTT 659
consensus_6712#1 AAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTT 601
*************************** ********************************
consensus_6712#0 AATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTG-ATATCATAACGTTACATG 718
consensus_6712#1 AATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATG 661
************** ***************** ******** ******************
consensus_6712#0 TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATA-CATGATATGTAATATGTG 777
consensus_6712#1 TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTG 721
***************************************** ******************
consensus_6712#0 CATTAATGGTGNAATT-ATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGG 836
consensus_6712#1 CATTAATGGTTGAATTTATTTCTT------------------------------------ 745
********** **** ** ****
consensus_6712#0 GATCACGTAGTGATATGAATAGTNATACTTAGGCTANG 874
consensus_6712#1 --------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||