|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence
[GNAACATACTTTTTTTTTTACTTTTTACATATGATAAACTAACAGGTGTGTTTTAATTTAAGGAATGAAAAATGAATTCGATAATAAAAGCAAGTGACTTTAAAGGTACATTGAATAATAACTTCACAACATTCAAGACATTTCGAACACATGAACACGAAAGGAGAGAAAAAATTGTCGTCTTGACTTCAAGTATTTACATTTTTATTATCCAAATTTACAAAAAATATTCATGGTATCGGTAAATATAGTTTTAGACAAAAAATCCAATTCAAAAACTGGTAGGTCATCTAATAA-TGTAGTGGAAGGTCGACATTTATCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGGATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCAATAGTTTGCAATTCGCATATTGTCTCATGGTGTCATGCAATAATGTTGGGATTGTCTGAAACATCTTTGGTATATCC]
[+] EMBL CD074530 [GNAACATACTTTTTTTTTTACTTTTTACATATGATAAACTAACAGGTGTGTTTTAATTTAAGGAATGAAAAATGAATTCGATAATAAAAGCAAGTGACTTTAAAGGTACATTGAATAATAACTTCACAACATTCAAGACATTTCGAACACATGAACACGAAAGGAGAGAAAAAATTGTCGTCTTGACTTCAAGTATTTACATTTTTATTATCCAAATTTACAAAAAATATTCATGGTATCGGTAAATATAGTTTTAGACAAAAAATCCAATTCAAAAACTGGTAGGTCATCTAATAA TGTAGTGGAAGGTCGACATTTATCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGGATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCAATAGTTTGCAATTCGCATATTGTCTCATGGTGTCATGCAATAATGTTGGGATTGTCTGAAACATCTTTGGTATATC ]
[-] EMBL CD080620 [ AACTAACAGGTGTGTTTT ATTNAAGGAATGAAAAATGAATTCGATAATAAAAGCAAGTGACTTTAAAGGTACATTGAATAATAACTTCACAACATTCAAGACATTTCGAACACATGAACACGAAAGGAGAGAAAAAATTGTCGTCTTGACTTCAAGTATTTACATTTTTATTATCCAAATTTACAAAAAATATTCATGGTATCGGTAAATATAGTTTTAGACAAAAAATCCAATTCAAAAACTGGTAGGTCATCTAATAA TGTAGTGGAAGGTCGACATTTATCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGGATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCAATAGTTTGCAATTCGCATATTGTCTCATGGTGTCATGCAATAATGTTGGGATTGTCTGAAACATCTTTGGTATATCC]
[+] EMBL CD136553 [ AGAAAAAATTGTCGCCTTGACTTCAAGTATTCACATTTTTATTATTCAAATTTACAAAAAATATTCATGGTATCGGTAAATATAGATTTAGACAAAAAATCCAATTCAAAAACTGGTAGGTCATCTAATAAGAGTAGTGGAAGGTCGACATTTATCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATCGACCAGT ]
consensusID : consensus_6717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[TCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGGATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCACTAAAATGACGGATAAGTTGGTGATATTCACGAATAAATAATAACATACATAGTTTGCAATTCGCATATTGTCTCATGGTGTCATGCAATAATG]
[-] EMBL CD179192 [TCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTGTTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAAAGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATTTTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGGATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCACTAAAATGACGGATAAGTTGGTGATATTCACGAATAAATAATAACATACATAGTTTGCAATTCGCATATTGTCTCATGGTGTCATGCAATAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6717#0 GNAACATACTTTTTTTTTTACTTTTTACATATGATAAACTAACAGGTGTGTTTTAATTTA 60
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 AGGAATGAAAAATGAATTCGATAATAAAAGCAAGTGACTTTAAAGGTACATTGAATAATA 120
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 ACTTCACAACATTCAAGACATTTCGAACACATGAACACGAAAGGAGAGAAAAAATTGTCG 180
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 TCTTGACTTCAAGTATTTACATTTTTATTATCCAAATTTACAAAAAATATTCATGGTATC 240
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 GGTAAATATAGTTTTAGACAAAAAATCCAATTCAAAAACTGGTAGGTCATCTAATAATGT 300
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 AGTGGAAGGTCGACATTTATCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTG 360
consensus_6717#1 -------------------TCAAAATATGGGATCTGATTAGGATGACCAGTTATCGATTG 41
*****************************************
consensus_6717#0 TTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAA 420
consensus_6717#1 TTGCAAAGTTGTAACTTTGTGAACAGCACAAAGTACAGGATTAGCAATCGCTTGATCCAA 101
************************************************************
consensus_6717#0 AGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATT 480
consensus_6717#1 AGACATACCAAATGGTCTTGATAAAAGGTATACAATTTGTAATATCAAAAGAAATGGATT 161
************************************************************
consensus_6717#0 TTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGG 540
consensus_6717#1 TTTGATAGACCAGTAATAAAGATTCACTAAGAATTTTTTGCTGCAATACACACTAAATGG 221
************************************************************
consensus_6717#0 ATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCAAT 600
consensus_6717#1 ATCACATCCAGTACAAGTAAATATCGTAGGTATAGTGGATAAATTTGTGCTAGTTTCACT 281
********************************************************** *
consensus_6717#0 AGTTTG-CAATTCGCATATTGTCTCATGGTGTCATGCAATAATGTTGGGATTGTCTGAAA 659
consensus_6717#1 AAAATGACGGATAAGTTGGTGATATTCACGAATAAATAATAACAT--ACATAGTTTGCAA 339
* ** * * * ** * ***** * ** ** ** **
consensus_6717#0 CATCTTTGGTATATCC------------------ 675
consensus_6717#1 TTCGCATATTGTCTCATGGTGTCATGCAATAATG 373
* * * **
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||