cluster # 6718

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Schistosoma mansoni
cluster # 6718 cluster # 6718 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6718#0 length = 726 sequences # 1
consensus_6718#1 length = 672 sequences # 1

consensus_6718#2 length = 633 sequences # 1
consensus_6718#3 length = 253 sequences # 1

consensusID : consensus_6718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 726
fasta sequence

                              [GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAGGAAAATCAATCTGATGAAGAATTACTTACATCTGCTGAATTACTGAAACGTTTTTATACCCTGTACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTATTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCT]

[+] EMBL CD080981             [GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAGGAAAATCAATCTGATGAAGAATTACTTACATCTGCTGAATTACTGAAACGTTTTTATACCCTGTACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTATTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCT]




>consensus_6718#0
GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAG
GAAAATCAATCTGATGAAGAATTACTTACATCTGCTGAATTACTGAAACGTTTTTATACC
CTGTACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAATCAAT
TAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTC
AAGCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGC
TGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTT
TGCAAAATCATAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAG
ACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAA
AAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAG
AAGGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTC
TATTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTA
AAATCT

consensusID : consensus_6718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [TAATAATCATATTATATGCAACCATTGAACAAGAAAACCTTTCAACATGCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGATAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAAGAATCAGTTAACTGTTTAGCATTATTTTAGATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTATACTAAAATCTACTAT]

[-] EMBL CD074602             [TAATAATCATATTATATGCAACCATTGAACAAGAAAACCTTTCAACATGCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGATAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAAGAATCAGTTAACTGTTTAGCATTATTTTAGATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTATACTAAAATCTACTAT]




>consensus_6718#1
TAATAATCATATTATATGCAACCATTGAACAAGAAAACCTTTCAACATGCTTTTAAACTT
GTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGATAGATTGAACGAT
TTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGA
CAGTGGAAGAATATCTTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTT
GTTGTCAGAATGAAAGAATCAGTTAACTGTTTAGCATTATTTTAGATATTCAAATAGTAT
TCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAA
AGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAA
AAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATC
ACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGT
AGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGAT
TCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTATACT
AAAATCTACTAT

consensusID : consensus_6718#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [ACCTGTANGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCTA]

[-] EMBL CD074807             [ACCTGTANGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCTA]




>consensus_6718#2
ACCTGTANGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTAC
CAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGTTGAAAGAATCCGATTTATCA
TGGTCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAG
CTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTT
TTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTT
TACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACA
GTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTT
CAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTAC
CCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGA
CTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGT
TTGTGTTTAAAGTGTTTTTTGTACTAAAATCTA

consensusID : consensus_6718#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [CGTAATTCAAATGAATCACCACATTGACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT]

[-] EMBL CD181381             [CGTAATTCAAATGAATCACCACATTGACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT]




>consensus_6718#3
CGTAATTCAAATGAATCACCACATTGACAGTGGGAAGAATATCTTTTTGCAAAATCATAT
TCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATG
CAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGT
CAGTCAGTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAA
ACAAATTAAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6718#0      GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAG 60
consensus_6718#2      ------------------------------------------------------------
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      ------------------------------------------------------------
                                                                                  

consensus_6718#0      GAAAATCAATCTGATGAAGA-ATTACTTACATCTGCTGAATTACTGAAACGTTTTTATAC 119
consensus_6718#2      ------------------------------------------------------------
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      -----------TAATAATCATATTATATGCAACCATTGAACAAG-AAAACCTTTCAACAT 48
                                                                                  

consensus_6718#0      CCTGT---ACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAAT 176
consensus_6718#2      ----------------------------ACCTGTANGGTCTTATTCAAGCTGAAGTTAAT 32
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      GCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGAT 108
                                                                                  

consensus_6718#0      CAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGA 236
consensus_6718#2      CAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGA 92
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      AGATTGAACGATTT-GCTGAACATATTTTAGCTGAAGAAC-GTTCGCGTAATTCAAATGA 166
                                                                                  

consensus_6718#0      ATTCAAG-------------------------CGATTACATGCGTATTCGGATGAAAAAG 271
consensus_6718#2      ATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAG 152
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      ATC-------------------------------ACCACATTTGACAGTGGAAGAATATC 195
                                                                                  

consensus_6718#0      ATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCG--CGTAATTCAAATGAAT 329
consensus_6718#2      ATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCG--CGTAATTCAAATGAAT 210
consensus_6718#3      --------------------------------------------CGTAATTCAAATGAAT 16
consensus_6718#1      TTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAA 255
                                                                   **  *   ****** 

consensus_6718#0      CACCACATTTGACAGTGG-AAGAATATCTTTTTGCAAAATCATA---------------- 372
consensus_6718#2      CACCACATTTGACAGTGG-AAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGA 269
consensus_6718#3      CACCACATT-GACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGA 75
consensus_6718#1      GAAT-CAGTTAACTGTTT----AGCATTATTTTAGATATTCAAAT------AGTATTCGA 304
                       *   ** *  ** **      *  **  ****  * * *** *                

consensus_6718#0      ----------AAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 422
consensus_6718#2      GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 329
consensus_6718#3      GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 135
consensus_6718#1      GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 364
                                **************************************************

consensus_6718#0      GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 482
consensus_6718#2      GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 389
consensus_6718#3      GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAA 195
consensus_6718#1      GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 424
                      *************************************************** ********

consensus_6718#0      ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNN 542
consensus_6718#2      ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTT 449
consensus_6718#3      ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT-- 253
consensus_6718#1      ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTT 484
                      *************************************                       

consensus_6718#0      NNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 602
consensus_6718#2      ACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 509
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      ACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 544
                                                                                  

consensus_6718#0      GGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTA 662
consensus_6718#2      GGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTA 569
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      GGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTA 604
                                                                                  

consensus_6718#0      TTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAA 722
consensus_6718#2      TTTTTCTAGCAACTGTTTTTGTTTGACGGGTTT-GTGTTTAAAGTGTTTTTTGTACTAAA 628
consensus_6718#3      ------------------------------------------------------------
consensus_6718#1      TTTTTCTAGCAACTGTTTTTGTTTGACGGGTTT-GTGTTTAAAGTGTTTTTTATACTAAA 663
                                                                                  

consensus_6718#0      ATCT----- 726
consensus_6718#2      ATCTA---- 633
consensus_6718#3      ---------
consensus_6718#1      ATCTACTAT 672