cluster # 6721

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Schistosoma mansoni
cluster # 6721 cluster # 6721 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6721#0 length = 624 sequences # 1
consensus_6721#1 length = 606 sequences # 1

consensus_6721#2 length = 496 sequences # 1
consensus_6721#3 length = 415 sequences # 1

consensusID : consensus_6721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [GAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAGTGAGGTTGTATGAGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACNNNNNNNNTGGCTCCACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCACATTTATAATTCAGTAGTTGCAAGTTGTCTGACGGGGATAGTAGTTTAGTTCTCTCTTTACTTTAGAAATGAGGAGGTGGATAGTCTCAGGCCTTTTCTGCAGTATGAGCGTCAATTGTGTGCACAGCTTCAGGACAGCAGTCTACTGTGAGTAAGTTT]

[+] EMBL CD080896             [GAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAGTGAGGTTGTATGAGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACNNNNNNNNTGGCTCCACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCACATTTATAATTCAGTAGTTGCAAGTTGTCTGACGGGGATAGTAGTTTAGTTCTCTCTTTACTTTAGAAATGAGGAGGTGGATAGTCTCAGGCCTTTTCTGCAGTATGAGCGTCAATTGTGTGCACAGCTTCAGGACAGCAGTCTACTGTGAGTAAGTTT]




>consensus_6721#0
GAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGNNNNNNNNNNNNNNNNNNNNNNNNNG
TTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAGTGAGGTTGTATGAG
AAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGT
TTGCAAAAATATCATTTCCATGGACTGTACAGTACNNNNNNNNTGGCTCCACTGTCAAAC
GGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTAC
TTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTC
GTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCATTAGGTTGTAAGATGTGC
TGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCACATTTATAATTCAGT
AGTTGCAAGTTGTCTGACGGGGATAGTAGTTTAGTTCTCTCTTTACTTTAGAAATGAGGA
GGTGGATAGTCTCAGGCCTTTTCTGCAGTATGAGCGTCAATTGTGTGCACAGCTTCAGGA
CAGCAGTCTACTGTGAGTAAGTTT

consensusID : consensus_6721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [AACATCTGAAAAGTTATATTTCATACAGATAGCACAACCCATCACCAACAAAGGCAAGCATCAGAGAGTAGACACAGCACATCTCGCTCAAATAGGATTTCCTACCAATAATGTGTCCAGCATCTGGTTGTTTCAAGTCACAAGCACTGTTTCAACAGTCCATATTATTCATCACATTGCGTTCAGCAATATAACAATTAGCATACACCTAGAAACAAAACAAACCTAAGTTAAAATGATCAATTATTTGTAATATCTGACACTTATAGTAATATTCACACGAAAACTAATCAAAGCACCAAATATCTCGTCAAAAACACGAGTAACAGCGGCTAATAAAGCCCAAACACAATCTATTCGCTAAGATATACCTCAAACCAACAGACCAACCGGAACGAGACACTCCAAATGACTAAAGCAGGCAACGCAATGTATCAGCCTTACTTATTGATGCACTATGGGTCGAACTCCACCTGTCATGAAACAATATTTTGTTATTGGCTACTGAAAAACGGCCTACACATTCTCAGTGCTCCGACTACTATATCTTCCCACTAACACCCAACAAGAAAATGTCGTACGACTACTGAAAGCCAACAGTTAGAG]

[+] EMBL CD074728             [AACATCTGAAAAGTTATATTTCATACAGATAGCACAACCCATCACCAACAAAGGCAAGCATCAGAGAGTAGACACAGCACATCTCGCTCAAATAGGATTTCCTACCAATAATGTGTCCAGCATCTGGTTGTTTCAAGTCACAAGCACTGTTTCAACAGTCCATATTATTCATCACATTGCGTTCAGCAATATAACAATTAGCATACACCTAGAAACAAAACAAACCTAAGTTAAAATGATCAATTATTTGTAATATCTGACACTTATAGTAATATTCACACGAAAACTAATCAAAGCACCAAATATCTCGTCAAAAACACGAGTAACAGCGGCTAATAAAGCCCAAACACAATCTATTCGCTAAGATATACCTCAAACCAACAGACCAACCGGAACGAGACACTCCAAATGACTAAAGCAGGCAACGCAATGTATCAGCCTTACTTATTGATGCACTATGGGTCGAACTCCACCTGTCATGAAACAATATTTTGTTATTGGCTACTGAAAAACGGCCTACACATTCTCAGTGCTCCGACTACTATATCTTCCCACTAACACCCAACAAGAAAATGTCGTACGACTACTGAAAGCCAACAGTTAGAG]




>consensus_6721#1
AACATCTGAAAAGTTATATTTCATACAGATAGCACAACCCATCACCAACAAAGGCAAGCA
TCAGAGAGTAGACACAGCACATCTCGCTCAAATAGGATTTCCTACCAATAATGTGTCCAG
CATCTGGTTGTTTCAAGTCACAAGCACTGTTTCAACAGTCCATATTATTCATCACATTGC
GTTCAGCAATATAACAATTAGCATACACCTAGAAACAAAACAAACCTAAGTTAAAATGAT
CAATTATTTGTAATATCTGACACTTATAGTAATATTCACACGAAAACTAATCAAAGCACC
AAATATCTCGTCAAAAACACGAGTAACAGCGGCTAATAAAGCCCAAACACAATCTATTCG
CTAAGATATACCTCAAACCAACAGACCAACCGGAACGAGACACTCCAAATGACTAAAGCA
GGCAACGCAATGTATCAGCCTTACTTATTGATGCACTATGGGTCGAACTCCACCTGTCAT
GAAACAATATTTTGTTATTGGCTACTGAAAAACGGCCTACACATTCTCAGTGCTCCGACT
ACTATATCTTCCCACTAACACCCAACAAGAAAATGTCGTACGACTACTGAAAGCCAACAG
TTAGAG

consensusID : consensus_6721#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [ATTTTCCGTTCACTGAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGTCGTCAACTGAGCTTAGTGTGGAAGGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAGTGAGGTTGTATGAGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTGGCTCCACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCAGAGGTGGGTAGCTGTTTGCATTATACTAAAAACTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCACATTTATAATTCAGTAG]

[+] EMBL CD201344             [ATTTTCCGTTCACTGAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGTCGTCAACTGAGCTTAGTGTGGAAGGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAGTGAGGTTGTATGAGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTGGCTCCACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCAGAGGTGGGTAGCTGTTTGCATTATACTAAAAACTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCACATTTATAATTCAGTAG]




>consensus_6721#2
ATTTTCCGTTCACTGAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGTCGTCAACTGAG
CTTAGTGTGGAAGGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAG
TGAGGTTGTATGAGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTTC
TCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTGG
CTCCACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTAT
TAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGG
TGATGGGATGTCTCGTCTCAGAGGTGGGTAGCTGTTTGCATTATACTAAAAACTCATTAG
GTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATATTACCCCAC
ATTTATAATTCAGTAG

consensusID : consensus_6721#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [ATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTGGCTCTACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCATAGGTGTATGCTAATTGTTATATTGCTGAACGCAATGTGATGAATAATATGGACTGTTGAAACAGTGCTTGTGACTTGAAACAACCAGATGCTGGACACATTATTGGTAGGAAATCCTATCTGAGCGAGATGTGCTGTGTCTACTCTCTGATGCTTGCCTTTGCTGGTGATGGGTTGTGCTATCTGTATGAA]

[+] EMBL CD115076             [ATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTGGCTCTACTGTCAAACGGGTGACGACCAATGTGACTTTTCTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCATAGGTGTATGCTAATTGTTATATTGCTGAACGCAATGTGATGAATAATATGGACTGTTGAAACAGTGCTTGTGACTTGAAACAACCAGATGCTGGACACATTATTGGTAGGAAATCCTATCTGAGCGAGATGTGCTGTGTCTACTCTCTGATGCTTGCCTTTGCTGGTGATGGGTTGTGCTATCTGTATGAA]




>consensus_6721#3
ATTTGTTGTAATCAAGTCAGTTCTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGG
ACTGTACAGTACTCCATAACTGGCTCTACTGTCAAACGGGTGACGACCAATGTGACTTTT
CTTATCCAATGTTCGGGTGTTATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTT
CTGTACGTGATTAAAATGAGTGGTGATGGGATGTCTCGTCTCATAGGTGTATGCTAATTG
TTATATTGCTGAACGCAATGTGATGAATAATATGGACTGTTGAAACAGTGCTTGTGACTT
GAAACAACCAGATGCTGGACACATTATTGGTAGGAAATCCTATCTGAGCGAGATGTGCTG
TGTCTACTCTCTGATGCTTGCCTTTGCTGGTGATGGGTTGTGCTATCTGTATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6721#0      --------------GAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGNNNNNNNNNNNN 46
consensus_6721#2      ATTTTCCGTTCACTGAACCGACTTTCTCTTAGGATGTTGTCTGAGTGGTCGTCAACTGAG 60
consensus_6721#3      ------------------------------------------------------------
consensus_6721#1      ----------------------------------------------------------AA 2
                                                                                  

consensus_6721#0      NNNNNNNNNNNNNGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAG 106
consensus_6721#2      CTTAGTGTGGAAGGTTTTCAATTAAGTCTTGCTTACTAACTGTCTTAACTGGTTTGTAAG 120
consensus_6721#3      ------------------------------------------------------------
consensus_6721#1      CATCTGAAAAGTTATATTTCATACAGATAGCACAACCCATCACCAACAAAGGCAAGCATC 62
                                                                                  

consensus_6721#0      TGAGGTTGTATG-AGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTT 165
consensus_6721#2      TGAGGTTGTATG-AGAAATTCCCACCTGATTAGCAGCAATTTGTTGTAATCAAGTCAGTT 179
consensus_6721#3      --------------------------------------ATTTGTTGTAATCAAGTCAGTT 22
consensus_6721#1      AGAGAGTAGACACAGCACATCTCGCTCAAATAGGATTTCCTACCAATAATGTGTCCAGCA 122
                                                              *     ****     ***  

consensus_6721#0      CTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACNNNNNNNNTG 225
consensus_6721#2      CTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTG 239
consensus_6721#3      CTCGGTTGTTAAGGTTTGCAAAAATATCATTTCCATGGACTGTACAGTACTCCATAACTG 82
consensus_6721#1      TCTGGTTGTTTCAAGTCACAA--GCACTGTTTCAACAGTCCATATTATTCATCACATTGC 180
                         *******     *  ***    *   **** *  * *  **   * *          

consensus_6721#0      GCTCCACTGTCAAACGGGTGACGACCAA-TGTGACTTTTCTTATCCAATGTTCGGGTG-T 283
consensus_6721#2      GCTCCACTGTCAAACGGGTGACGACCAA-TGTGACTTTTCTTATCCAATGTTCGGGTG-T 297
consensus_6721#3      GCTCTACTGTCAAACGGGTGACGACCAA-TGTGACTTTTCTTATCCAATGTTCGGGTG-T 140
consensus_6721#1      GTTCAGCAATATAACAATTAGCATACACCTAGAAACAAAACAAACCTAAGTTAAAATGAT 240
                      * **  *  *  ***   *  *   **  *   *        * ** * ***    ** *

consensus_6721#0      TATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAG 343
consensus_6721#2      TATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAG 357
consensus_6721#3      TATTAGTTTATGATTACTTACCTAGCTGCCAAGAGTTTTTCTGTACGTGATTAAAATGAG 200
consensus_6721#1      CAATTATTTGTAATATCTGACACTTATAGTAATATTCACACGAAAACTAATCAAAGC--- 297
                       * *  *** * **  ** **     *   ** * *    *   *  * ** ***     

consensus_6721#0      TGGTGATGGGATGTCTCGTCTCAANNNNNNNNNNNNNNNNNNNNNNNN--NNNNA---AA 398
consensus_6721#2      TGGTGATGGGATGTCTCGTCTCAGAGGTGGGTAGCTGTTTGCATTATA--CTAAA---AA 412
consensus_6721#3      TGGTGATGGGATGTCTCGTCTCATAGGTGTATGCTAATTGTTATATTG--CTGAACGCAA 258
consensus_6721#1      -----ACCAAATATCTCGTCAAAAACACGAGTAACAGCGGCTAATAAAGCCCAAACACAA 352
                           *    ** *******  *                               *   **

consensus_6721#0      CTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATAT 458
consensus_6721#2      CTCATTAGGTTGTAAGATGTGCTGAGGTCCATAATGGCGGTGTTACTCTTCCAAATATAT 472
consensus_6721#3      TGTGATGAATAATATGGACTGTTGAAA-CAGTGCTTGTGACTTGAAACAACCAGATGCTG 317
consensus_6721#1      TCTATTCG---CTAAGATATACCTCAAACCAACAGACCAACCGGAACGAGACACTCCAAA 409
                           *      ** *   *        *               *      **       

consensus_6721#0      TACCCCACATTTATAATTCAG--TAGTTGCAAGTTGTCTGACGGGGATAGTAGTTTAGTT 516
consensus_6721#2      TACCCCACATTTATAATTCAG--TAG---------------------------------- 496
consensus_6721#3      GACACATTATTGGTAGGAAATCCTATCTGAGCGAGATGTGCTGTGTCTACTCTCTGATGC 377
consensus_6721#1      TGACTAAAGCAGGCAACGCAATGTATCAGCCTTACTTATTGATGCACTATGGGTCGAACT 469
                                    *    *   **                                   

consensus_6721#0      CTCTCTTTACTTTAGAAATGAGGAGGTGGATA-GTCTCAGGCCTTTTCTGCAGTATGAGC 575
consensus_6721#2      ------------------------------------------------------------
consensus_6721#3      TTGCCTTTGCTGGTGATGGGTTGTGCTATCTG-TATGAA--------------------- 415
consensus_6721#1      CCACCTGTCATGAAACAATATTTTGTTATTGGCTACTGAAAAACGGCCTACACATTCTCA 529
                                                                                  

consensus_6721#0      GTCAATTGTGTGCACAGCTTCAGGACAGCAGTCTACTGTGAGTAAGTTT----------- 624
consensus_6721#2      ------------------------------------------------------------
consensus_6721#3      ------------------------------------------------------------
consensus_6721#1      GTGCTCCGACTACTATATCTTCCCACTAACACCCAACAAGAAAATGTCGTACGACTACTG 589
                                                                                  

consensus_6721#0      -----------------
consensus_6721#2      -----------------
consensus_6721#3      -----------------
consensus_6721#1      AAAGCCAACAGTTAGAG 606