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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTCATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCAGTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTTTTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCCTAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTCTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCACTATCAATGTATTATCATGTATAGTACTAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGACTCAACTTCTCGATACGGTATGTGAAAATTTGTGCTATATACTGAATAAAATTAGGTCGTTTCACTGACAGAAGGTGATGTANTATA]
[+] EMBL CD080920 [TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTCATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCAGTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTTTTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCCTAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTCTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCACTATCAATGTATTATCATGTATAGTACTAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGACTCAACTTCTCGATACGGTATGTGAAAATTTGTGCTATATACTGAATAAAATTAGGTCGTTTCACTGACAGAAGGTGATGTANTATA]
consensusID : consensus_6722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 720 fasta sequence
[GGCACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTCTTCCTAATTTATATGTGTCATGTAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATC-AAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCACTATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACATATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG]
[+] EMBL CD083961 [GGCACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTCTTCCTAATTTATATGTGTCATGTAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATC AAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATC ]
[-] EMBL CD077220 [ GGCCA TGCATCAAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGG AATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCACTATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACATATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG]
[-] EMBL CD074753 [ ATGGGTTCATCCTTAACATATAAGTACTAAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATGTAATAAATACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6722#0 TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTC 60
consensus_6722#1 ------------------------------------------------------------
consensus_6722#0 ATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCA 120
consensus_6722#1 ------------------------------------------------------------
consensus_6722#0 GTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTT 180
consensus_6722#1 ---------------------------------------------------------GGC 3
consensus_6722#0 TTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCC 240
consensus_6722#1 ACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGT-CTTCC 62
************************************************ *****
consensus_6722#0 TAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGG 300
consensus_6722#1 TAATTTATATGTGT-CATGTAA-CAGTTGTACAGACAGTATTGAAAGAAGAACATGACGG 120
************** ******* *************************************
consensus_6722#0 GCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTG 360
consensus_6722#1 GCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTG 180
********** **********************************
consensus_6722#0 ATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAG 420
consensus_6722#1 ATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAG 240
************************************************************
consensus_6722#0 AGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCT------- 473
consensus_6722#1 AGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTC 300
*****************************************************
consensus_6722#0 ------------------------CTGTTTTTACTAATGTCGACTAAACGATCTCTTCAT 509
consensus_6722#1 TCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCAT 360
************************************
consensus_6722#0 TGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAA 569
consensus_6722#1 TGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAA 420
************************************************************
consensus_6722#0 TTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCAC 629
consensus_6722#1 TTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCAC 480
*********************************************** ************
consensus_6722#0 TATCAATGTATTATCATGTATA-------------------------------------- 651
consensus_6722#1 TATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACAT 540
**********************
consensus_6722#0 ----GTACTAAATA-TCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTT 706
consensus_6722#1 ATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTT 600
******** * *********************************************
consensus_6722#0 ATGTCGTTTCGA-CTCAACTTC-TCGAT-ACGGTATGTGAAAA--TTTGTGCTA-TAT-A 759
consensus_6722#1 ATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTA 660
************ ********* ***** ************** ********* *** *
consensus_6722#0 CTGA-ATAAAATT-AGGTCGTTTC--ACTGACAGAAGGT----GATGTANTATA------ 805
consensus_6722#1 CTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG 720
**** ******** ********* ***** * ** ** ** ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||