These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTCATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCAGTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTTTTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCCTAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTCTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCACTATCAATGTATTATCATGTATAGTACTAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGACTCAACTTCTCGATACGGTATGTGAAAATTTGTGCTATATACTGAATAAAATTAGGTCGTTTCACTGACAGAAGGTGATGTANTATA] [+] EMBL CD080920 [TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTCATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCAGTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTTTTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCCTAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTCTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCACTATCAATGTATTATCATGTATAGTACTAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGACTCAACTTCTCGATACGGTATGTGAAAATTTGTGCTATATACTGAATAAAATTAGGTCGTTTCACTGACAGAAGGTGATGTANTATA] consensusID : consensus_6722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 720 fasta sequence [GGCACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTCTTCCTAATTTATATGTGTCATGTAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATC-AAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCACTATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACATATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG] [+] EMBL CD083961 [GGCACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTCTTCCTAATTTATATGTGTCATGTAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGGGCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTGATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAGAGGCCATTGCATC AAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATC ] [-] EMBL CD077220 [ GGCCA TGCATCAAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTCTCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCATTGTACTTTGTAACTGTGATTAGG AATTCTACTGACATTCACTGACGATGTTAATTCTAATTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCACTATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACATATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG] [-] EMBL CD074753 [ ATGGGTTCATCCTTAACATATAAGTACTAAAATATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTTATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTACTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATGTAATAAATACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6722#0 TACTGGAAAATGTTCATGTAAAGTCCCAAACTAACAACTGTTGTCAGAAATCCTATTCTC 60 consensus_6722#1 ------------------------------------------------------------ consensus_6722#0 ATCCATCTTGCATTCGAAGGTGAGAAAATTTCAGTTAGGACCGTAAGAAGGATTGAATCA 120 consensus_6722#1 ------------------------------------------------------------ consensus_6722#0 GTACTGAAAAGATGCTTCCCTACAGCCAAACTATATNNNNNNCCTAACTCTAAATGTTTT 180 consensus_6722#1 ---------------------------------------------------------GGC 3 consensus_6722#0 TTTTTAAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGTACTTCC 240 consensus_6722#1 ACGAGGAATCAATCAAATGTGGAGCTATATCATTCTGAAGTCAACATCAAATGT-CTTCC 62 ************************************************ ***** consensus_6722#0 TAATTTATATGTGTTCATGTAAACAGTTGTACAGACAGTATTGAAAGAAGAACATGACGG 300 consensus_6722#1 TAATTTATATGTGT-CATGTAA-CAGTTGTACAGACAGTATTGAAAGAAGAACATGACGG 120 ************** ******* ************************************* consensus_6722#0 GCTTCTCCGANNNNNNNNNNNNNNNNGTGTGTCTTAGTAAGTAAATTTTACACAAATGTG 360 consensus_6722#1 GCTTCTCCGAAGATATCCCTTGAACAGTGTGTCTTAGTAAGTAAATTTTACACAAATGTG 180 ********** ********************************** consensus_6722#0 ATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAG 420 consensus_6722#1 ATTACAGAAGCAATTGGAATCACAAACACTCAGTGAAAGCCACATTACTCCAATTAACAG 240 ************************************************************ consensus_6722#0 AGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCT------- 473 consensus_6722#1 AGGCCATTGCATCAAGTACTTCCAACTTAACAATTATAAACTGGAAGAATGCTAAACGTC 300 ***************************************************** consensus_6722#0 ------------------------CTGTTTTTACTAATGTCGACTAAACGATCTCTTCAT 509 consensus_6722#1 TCATTGTCAAGGTAATGTAGGTAACTGTTTTTACTAATGTCGACTAAACGATCTCTTCAT 360 ************************************ consensus_6722#0 TGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAA 569 consensus_6722#1 TGTACTTTGTAACTGTGATTAGGAAATTCTACTGACATTCACTGACGATGTTAATTCTAA 420 ************************************************************ consensus_6722#0 TTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTNTGTTTTATTCAC 629 consensus_6722#1 TTTTATGTCGACTAGATGCTTTGATTATCACTAAATTGTTAACAATTTTGTTTTATTCAC 480 *********************************************** ************ consensus_6722#0 TATCAATGTATTATCATGTATA-------------------------------------- 651 consensus_6722#1 TATCAATGTATTATCATGTATAACTGCACCCACTTCCTTTTATGGCTTCATCCTTAACAT 540 ********************** consensus_6722#0 ----GTACTAAATA-TCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTT 706 consensus_6722#1 ATAAGTACTAAAAAATCGTTGCGGCTATGTTGGGTATATTGTTTCATAGCCTGGTTTCTT 600 ******** * ********************************************* consensus_6722#0 ATGTCGTTTCGA-CTCAACTTC-TCGAT-ACGGTATGTGAAAA--TTTGTGCTA-TAT-A 759 consensus_6722#1 ATGTCGTTTCGAACTCAACTTCCTCGATTACGGTATGTGAAAAATTTTGTGCTAATATTA 660 ************ ********* ***** ************** ********* *** * consensus_6722#0 CTGA-ATAAAATT-AGGTCGTTTC--ACTGACAGAAGGT----GATGTANTATA------ 805 consensus_6722#1 CTGATATAAAATTTAGGTCGTTTTCAGCTGACGAGAAGTTTGAAATTTAATAAATACATG 720 **** ******** ********* ***** * ** ** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||