cluster # 6724

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Schistosoma mansoni
cluster # 6724 cluster # 6724 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6724#0 length = 735 sequences # 1

consensus_6724#1 length = 626 sequences # 3

consensusID : consensus_6724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGACAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACGTGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNNATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAATAAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCACACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTCATGTGATCGTAATTTAAACTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCATTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTATTTACAACGATATATAGAGATGCTCTTAGTCTGGGATGGNATGTACATTACATAAA]

[+] EMBL CD080941             [NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGACAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACGTGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNNATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAATAAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCACACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTCATGTGATCGTAATTTAAACTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCATTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTATTTACAACGATATATAGAGATGCTCTTAGTCTGGGATGGNATGTACATTACATAAA]




>consensus_6724#0
NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGA
CAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACG
TGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNN
ATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAAT
AAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCG
AGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAA
CCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCC
AGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCAT
TTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCACACATTATAATGAGAGGTC
TAGTTGACAATTTATTANATTCATGTGATCGTAATTTAAACTGGAATTGGTCCCATTGGG
TGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCATTTTTCATTTGGAAAGCGTT
GTATTNGCATTTATGGCTATTTACAACGATATATAGAGATGCTCTTAGTCTGGGATGGNA
TGTACATTACATAAA

consensusID : consensus_6724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 626
fasta sequence

                              [ATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTG-TAGAAAAAAAAAAAAAAAAAAAAAAAAGC-ATGCCATGCAGCTGCATT-CCGTATCGTGTA]

[-] EMBL CD074775             [ATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTTTAGGTTTTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGT                                                                      ]
[-] EMBL AI976649             [                                                                                                                                                                                                                                                    TGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTG TAGAAAAAAAAAAAAAAAAAAAAAAAAGC ATGCCATGCAGCTGCATT CCGTATCGT   ]
[-] EMBL AW017195             [                                                                                                                                                                                                                                                                                     TATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTGTTGGAAAAAAAAAAAAAAAAAAAAANNNNCAATGCCATGCAGCTGCATTACCGTACTGCGTA]




>consensus_6724#1
ATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAG
CATCCGAACGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATT
GCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGA
CAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTC
TTTATGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACA
ATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAAT
ATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTG
CATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGT
AACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGT
TATCTTGATAAATAAAAGTTTCTTTTGTAGAAAAAAAAAAAAAAAAAAAAAAAAGCATGC
CATGCAGCTGCATTCCGTATCGTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6724#0      NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGA 60
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      CAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACG 120
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      TGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNN 180
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      ATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAAT 240
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      AAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCG 300
consensus_6724#1      -----------------------------------------------ATACAGCCCGCCG 13
                                                                     *************

consensus_6724#0      AGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAA 360
consensus_6724#1      AGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAA 73
                      **************************                             *****

consensus_6724#0      CCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCC 420
consensus_6724#1      CCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCC 133
                      ************************************************************

consensus_6724#0      AGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCAT 480
consensus_6724#1      AGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCAT 193
                      ************************************************************

consensus_6724#0      TTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAC------------------ 522
consensus_6724#1      TTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTT 253
                      *****************************************                   

consensus_6724#0      --------------------ACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTC 562
consensus_6724#1      ATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTC 313
                                          *********************************** ****

consensus_6724#0      ATGTGATCGTAATTTAAA-CTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATT 621
consensus_6724#1      ATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATT 373
                      ****************** ************* ***************************

consensus_6724#0      GAATTTAGGCCAGAAACCA-TTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTAT 680
consensus_6724#1      GAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTAT 433
                      ******************* **************    ***** * **************

consensus_6724#0      TTACAA-CGATATATAGA-GATGCTCTTAGT-CTGGGATGGNATGT--ACATTA-CATAA 734
consensus_6724#1      TTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAA 493
                      ****** *********** ********  ** ********* ***   ****** *****

consensus_6724#0      A----------------------------------------------------------- 735
consensus_6724#1      AACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAAT 553
                      *                                                           

consensus_6724#0      ------------------------------------------------------------
consensus_6724#1      AAAAGTTTCTTTTGTAGAAAAAAAAAAAAAAAAAAAAAAAAGCATGCCATGCAGCTGCAT 613
                                                                                  

consensus_6724#0      -------------
consensus_6724#1      TCCGTATCGTGTA 626