These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGACAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACGTGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNNATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAATAAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCACACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTCATGTGATCGTAATTTAAACTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCATTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTATTTACAACGATATATAGAGATGCTCTTAGTCTGGGATGGNATGTACATTACATAAA] [+] EMBL CD080941 [NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGACAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACGTGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNNATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAATAAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCACACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTCATGTGATCGTAATTTAAACTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCATTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTATTTACAACGATATATAGAGATGCTCTTAGTCTGGGATGGNATGTACATTACATAAA] consensusID : consensus_6724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 626 fasta sequence [ATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTG-TAGAAAAAAAAAAAAAAAAAAAAAAAAGC-ATGCCATGCAGCTGCATT-CCGTATCGTGTA] [-] EMBL CD074775 [ATACAGCCCGCCGAGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAACCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCCAGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCATTTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTTTAGGTTTTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGT ] [-] EMBL AI976649 [ TGAATTGTTATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTG TAGAAAAAAAAAAAAAAAAAAAAAAAAGC ATGCCATGCAGCTGCATT CCGTATCGT ] [-] EMBL AW017195 [ TATAATGAGAGGTCTAGTTGACAATTTATTAAATTCATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATTGAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTATTTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAAAACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAATAAAAGTTTCTTTTGTTGGAAAAAAAAAAAAAAAAAAAAANNNNCAATGCCATGCAGCTGCATTACCGTACTGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6724#0 NNNNNNNNNNNNNNNCATTCAAGAGTTAATCAAAAGCATGGCATCAACAGCACAGCTTGA 60 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 CAGTGGGCAACAGAAAGATTTCAAAGTAGTAGTTCTGCACGAAGCGGACCATTTAACACG 120 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 TGATGCACAACATGCTTTACGTAGAACTATGGAAAAGTACATATCCACTTGCNNNNNNNN 180 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 ATTGTCAGCGGAATCTACTAGTAAGATCATTTCCGCTACTCGTTCAAGATGTCTACCAAT 240 consensus_6724#1 ------------------------------------------------------------ consensus_6724#0 AAGAGTTTCTGCCCCATCTATCGATGAAATTGTTGAAATATTGAGAAATACAGCCCGCCG 300 consensus_6724#1 -----------------------------------------------ATACAGCCCGCCG 13 ************* consensus_6724#0 AGAAGGCCATTCAATGCCGGTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAA 360 consensus_6724#1 AGAAGGCCATTCAATGCCGGTTGAACTAGCTAAACGTATCGCGTTAGCATCCGAACGGAA 73 ************************** ***** consensus_6724#0 CCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCC 420 consensus_6724#1 CCTACGTAGAGCTCTTTTATATGCTGAGGTAGCTAAGTGGCAGCATTGCCCCATGCTTCC 133 ************************************************************ consensus_6724#0 AGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCAT 480 consensus_6724#1 AGACCAGAGTGTGCAGTTACCTGACTGGCAAGTCTTTCTTACCGAGACAGCATCAGCCAT 193 ************************************************************ consensus_6724#0 TTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAC------------------ 522 consensus_6724#1 TTTGGCGGAACAAAGTCCGAAAAAAATATTAGAAGTTCGCAATCGTCTTTATGAATTGTT 253 ***************************************** consensus_6724#0 --------------------ACATTATAATGAGAGGTCTAGTTGACAATTTATTANATTC 562 consensus_6724#1 ATGTCACTGTATTCCGCCCAACATTATAATGAGAGGTCTAGTTGACAATTTATTAAATTC 313 *********************************** **** consensus_6724#0 ATGTGATCGTAATTTAAA-CTGGAATTGGTCCCATTGGGTGCAGAATATGAACATCGATT 621 consensus_6724#1 ATGTGATCGTAATTTAAAACTGGAATTGGTCCAATTGGGTGCAGAATATGAACATCGATT 373 ****************** ************* *************************** consensus_6724#0 GAATTTAGGCCAGAAACCA-TTTTTCATTTGGAAAGCGTTGTATTNGCATTTATGGCTAT 680 consensus_6724#1 GAATTTAGGCCAGAAACCAATTTTTCATTTGGAAGCGTTTGTAATTGCATTTATGGCTAT 433 ******************* ************** ***** * ************** consensus_6724#0 TTACAA-CGATATATAGA-GATGCTCTTAGT-CTGGGATGGNATGT--ACATTA-CATAA 734 consensus_6724#1 TTACAAACGATATATAGAAGATGCTCTAGGTTCTGGGATGGAATGGTAACATTAACATAA 493 ****** *********** ******** ** ********* *** ****** ***** consensus_6724#0 A----------------------------------------------------------- 735 consensus_6724#1 AACAAATATTCAATTCTCAAGATGTATTGTGTATATTTATTACGAGTTATCTTGATAAAT 553 * consensus_6724#0 ------------------------------------------------------------ consensus_6724#1 AAAAGTTTCTTTTGTAGAAAAAAAAAAAAAAAAAAAAAAAAGCATGCCATGCAGCTGCAT 613 consensus_6724#0 ------------- consensus_6724#1 TCCGTATCGTGTA 626 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||