cluster # 6727

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Schistosoma mansoni
cluster # 6727 cluster # 6727 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6727#0 length = 890 sequences # 3

consensus_6727#1 length = 689 sequences # 1

consensusID : consensus_6727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 890
fasta sequence

                              [GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGG-TTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGGTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGTCACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTTGTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC]

[+] EMBL CD086992             [GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGG TTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATNGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD139604             [                                              GATTCAGGGTTTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTGCCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD074847             [                                                                                                                                                                                                                                                                                 AATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGGTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGTCACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTTGTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC]




>consensus_6727#0
GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGGTTTGT
GTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAA
GTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGAT
AACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCA
GCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTC
AAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAAT
AAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGT
AAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGGT
TCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACT
CCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTA
GCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGCT
GATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAAC
CTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGTC
ACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTTG
TTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC

consensusID : consensus_6727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [GGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGTCACAATGGCCGTATCCTCGNCAATNTGNTGNGTATTATTTTACTTTGAATTATTCATGAGATTAAATATATCTT]

[+] EMBL CD081021             [GGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGTCACAATGGCCGTATCCTCGNCAATNTGNTGNGTATTATTTTACTTTGAATTATTCATGAGATTAAATATATCTT]




>consensus_6727#1
GGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAACTCCCCACCCTTCAAAGT
CCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGC
TTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATNNNNNNNNNNNNN
NNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTG
AAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTA
TTCGAACTTCTAGTCTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACC
TTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGA
AGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGA
CTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGA
GTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATAC
ANAAATATTAACAGTCACAATGGCCGTATCCTCGNCAATNTGNTGNGTATTATTTTACTT
TGAATTATTCATGAGATTAAATATATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6727#0      GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGGTTTGT 60
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      GTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAA 120
consensus_6727#1      -------------------------------------------------------GGAAA 5
                                                                              ****

consensus_6727#0      GTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGAT 180
consensus_6727#1      GTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAA----------------------- 42
                      *************************************                       

consensus_6727#0      AACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCA 240
consensus_6727#1      --CTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCA 100
                        **********************************************************

consensus_6727#0      GCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTC 300
consensus_6727#1      GCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTC 160
                      ************************************************************

consensus_6727#0      AAATCATCAGAATTGTTTGAGGCATTTTTGA-TGACAGTGATATTTGAAGGCTTGGAAAA 359
consensus_6727#1      AAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAA 220
                      *******                         ****************************

consensus_6727#0      TAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGG 419
consensus_6727#1      TAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGG 280
                      ************************************************************

consensus_6727#0      TAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGG 479
consensus_6727#1      TAAACCACAAGAACAATGTATTCGAACTTCTAGTC------------------------- 315
                      ***********************************                         

consensus_6727#0      TTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATAC 539
consensus_6727#1      TTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATAC 375
                      ************************************************************

consensus_6727#0      TCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGT 599
consensus_6727#1      TCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGT 435
                      ************************************************************

consensus_6727#0      AGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGC 659
consensus_6727#1      AGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGC 495
                      **********************                **********************

consensus_6727#0      TGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAA 719
consensus_6727#1      TGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAA 555
                      ************************************************************

consensus_6727#0      CCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGT 779
consensus_6727#1      CCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGT 615
                      ************************************    ****** *************

consensus_6727#0      CACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTT 839
consensus_6727#1      CACAATGGCCGT----------------------------------ATCCTCGNCAATNT 641
                      ******* * **                                  ******* **** *

consensus_6727#0      GTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC- 890
consensus_6727#1      GNTGNGTATTATTTT-ACTTTGAATTATTC--ATGAGATT-AAATATATCTT 689
                      * ** ********** *************   ******** *******