cluster # 6737

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6737 cluster # 6737 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6737#0 length = 888 sequences # 1

consensus_6737#1 length = 684 sequences # 3

consensusID : consensus_6737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 888
fasta sequence

                              [TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCACTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAATCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTTCTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACTGGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAATAGTAATTNTGATCGAAACTCGATTTCTATCTTACATCGACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAATCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAAAANAAGCCGAGGCTACCCGTGCCACAAAGAGGACTTGACGCACGGATAAACCCTTTCGATCTGGTTATTAAAATTATAGGGGGTATTATTTTCCCTTTTGGGAAGCATCACTGATGCTCAGGCAAAAAGAAATATAATT]

[+] EMBL CD080961             [TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCACTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAATCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTTCTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACTGGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAATAGTAATTNTGATCGAAACTCGATTTCTATCTTACATCGACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAATCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAAAANAAGCCGAGGCTACCCGTGCCACAAAGAGGACTTGACGCACGGATAAACCCTTTCGATCTGGTTATTAAAATTATAGGGGGTATTATTTTCCCTTTTGGGAAGCATCACTGATGCTCAGGCAAAAAGAAATATAATT]




>consensus_6737#0
TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCA
CTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAA
TCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTT
CTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACT
GGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCG
GCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCAC
TCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATT
CCAGCACTTCTCACACGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTG
CCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTT
TACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCT
CACACTTGAATAGTAATTNTGATCGAAACTCGATTTCTATCTTACATCGACGTGGAAGAA
TTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAATCGCTGAGGCCA
GAAGCAGTGATAATTTTCTTGTGGATGAAAANAAGCCGAGGCTACCCGTGCCACAAAGAG
GACTTGACGCACGGATAAACCCTTTCGATCTGGTTATTAAAATTATAGGGGGTATTATTT
TCCCTTTTGGGAAGCATCACTGATGCTCAGGCAAAAAGAAATATAATT

consensusID : consensus_6737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 684
fasta sequence

                              [TCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACACGTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATCGACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAATCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCGTTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGAATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCGATGTAAATAAATATGTA]

[-] EMBL CD074982             [TCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACACGTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATCGACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAATCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCGTTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGAATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCGATGTAAATAAATATGTA]
[-] EMBL BG930367             [TCTCTCGGCAAGTAGCAACATCAATGATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD190564             [                                                                                                                                                                                                                                   TCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTGCTGTAGATGAACAATTAAGAGATCTCACTCTTGAAGGTGAACGCAATCGGACACGTGTTGATCGAGATCCTCAGAATAGTAATTT                                                                                                                                                                                                                                                                                              ]




>consensus_6737#1
TCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAG
ATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGAT
TTTGATTCCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCT
TGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGAT
GTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGA
TACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAAT
CGAACACGTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATC
TTACATCGACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCA
AGCGGAATCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAG
GCTACCGTTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTT
ATTTAGAATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCAT
GTCTTCGATGTAAATAAATATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6737#0      TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCA 60
consensus_6737#1      ------------------------------------------------------------
                                                                                  

consensus_6737#0      CTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAA 120
consensus_6737#1      ------------------------------------------------------------
                                                                                  

consensus_6737#0      TCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTT 180
consensus_6737#1      ------------------------------------------------------------
                                                                                  

consensus_6737#0      CTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACT 240
consensus_6737#1      ------------------------------------------------------------
                                                                                  

consensus_6737#0      GGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCG 300
consensus_6737#1      -----------------------------------------------------TCTCTCG 7
                                                                           *******

consensus_6737#0      GCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCAC 360
consensus_6737#1      GCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCAC 67
                      ************************************************************

consensus_6737#0      TCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATT 420
consensus_6737#1      TCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATT 127
                      ************************************************************

consensus_6737#0      CCAGCACTTCTCACAC-------------------------------GAAGCTTGTTTTG 449
consensus_6737#1      CCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTG 187
                      ****************                               *************

consensus_6737#0      AAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATA 509
consensus_6737#1      AAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATA 247
                      ************************************************************

consensus_6737#0      GTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTAC 569
consensus_6737#1      GTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTAC 307
                      ************************************************************

consensus_6737#0      GTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAA------------------- 610
consensus_6737#1      GTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACAC 367
                      *****************************************                   

consensus_6737#0      ----------------------TAGTAATTNTGATCGAAACTCGATTTCTATCTTACATC 648
consensus_6737#1      GTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATC 427
                                            ******** ****************** **********

consensus_6737#0      GACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAA 708
consensus_6737#1      GACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAA 487
                      *********** ************************************** *     ***

consensus_6737#0      TCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAA-AANAAGCCGAGGCTACCC 767
consensus_6737#1      TCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCG 547
                      **********   **************************** ** ************** 

consensus_6737#0      GTGCCACAAAG--AGGACTTGACGC-ACGGA-TAAACCCTTTCGATCTG-GTTATT-AAA 821
consensus_6737#1      TTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGA 607
                       * * *** *   ** ********* ***** ****** *********  ****** * *

consensus_6737#0      ATTAT-AGGGGGTATTATTTTCCCTTTTGGGAAG--CATCA-CTGATGCTCAGG-CAAAA 876
consensus_6737#1      ATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCG 667
                      ***** *** * *********** **  *****   ***** ********** * *    

consensus_6737#0      AGAAATATAATT----- 888
consensus_6737#1      ATGTAAATAAATATGTA 684
                      *   * **** *