cluster # 6745

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Schistosoma mansoni
cluster # 6745 cluster # 6745 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6745#0 length = 853 sequences # 2

consensus_6745#1 length = 786 sequences # 2

consensusID : consensus_6745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 853
fasta sequence

                              [AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA-TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA]

[-] EMBL CD084364             [AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGC                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD183802             [                                                                                                                                                                                                                                                                                              CCATTTTGAAGGAAACGGACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGTTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA]




>consensus_6745#0
AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAA
TACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTG
GATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATA
TATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTT
ACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAA
ACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGG
CACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATG
AACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTT
GTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAAT
GGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTG
ATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAAC
ATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCAC
TGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATA
ATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATG
TAATGGAGGAACA

consensusID : consensus_6745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 786
fasta sequence

                              [TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG]

[+] EMBL CD075090             [TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD081259             [                                 AATAGCATGAATAGATTGATA TTTAAAAGTACACAGATACGAATGGTGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG]




>consensus_6745#1
TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAA
AAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCA
GTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATG
AAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTT
TTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAA
TGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT
TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAA
TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC
TTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACT
GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT
GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA
CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC
AACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCC
TCGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6745#0      ------------------------------------------------------------
consensus_6745#1      TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAA 60
                                                                                  

consensus_6745#0      ------------------------------------------------------------
consensus_6745#1      AAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCA 120
                                                                                  

consensus_6745#0      ------------------------------------------------------------
consensus_6745#1      GTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATG 180
                                                                                  

consensus_6745#0      ------------------------------------------------------------
consensus_6745#1      AAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTT 240
                                                                                  

consensus_6745#0      ------------------------------------------------------------
consensus_6745#1      TTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAA 300
                                                                                  

consensus_6745#0      -------AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 53
consensus_6745#1      TGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 360
                             *****************************************************

consensus_6745#0      TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAA 113
consensus_6745#1      TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAA 420
                      ****************************************** ************* ***

consensus_6745#0      TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 173
consensus_6745#1      TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 480
                      ************************************************************

consensus_6745#0      TTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACT 233
consensus_6745#1      TTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACT 540
                      *********************************** ************************

consensus_6745#0      GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 293
consensus_6745#1      GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 600
                      ************************************************************

consensus_6745#0      GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 353
consensus_6745#1      GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 660
                      ************************************************************

consensus_6745#0      CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 413
consensus_6745#1      CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 720
                      ************************************************************

consensus_6745#0      AACTATGAACCCATTCTGATGTTGGTTCCC-AAGTTGATGAATTTATTTCATTTA-ATTT 471
consensus_6745#1      AACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCC 780
                      *****************************  ********     *    ****       

consensus_6745#0      TTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGAT 531
consensus_6745#1      TCGGAG------------------------------------------------------ 786
                      * * **                                                      

consensus_6745#0      TGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTC 591
consensus_6745#1      ------------------------------------------------------------
                                                                                  

consensus_6745#0      TTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTA 651
consensus_6745#1      ------------------------------------------------------------
                                                                                  

consensus_6745#0      TTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGT 711
consensus_6745#1      ------------------------------------------------------------
                                                                                  

consensus_6745#0      ACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTC 771
consensus_6745#1      ------------------------------------------------------------
                                                                                  

consensus_6745#0      TGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGT 831
consensus_6745#1      ------------------------------------------------------------
                                                                                  

consensus_6745#0      CATTTTATGTAATGGAGGAACA 853
consensus_6745#1      ----------------------