These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA-TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA] [-] EMBL CD084364 [AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGC ] [+] EMBL CD183802 [ CCATTTTGAAGGAAACGGACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGTTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA] consensusID : consensus_6745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence [TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG] [+] EMBL CD075090 [TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAAT ] [-] EMBL CD081259 [ AATAGCATGAATAGATTGATA TTTAAAAGTACACAGATACGAATGGTGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6745#0 ------------------------------------------------------------ consensus_6745#1 TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAA 60 consensus_6745#0 ------------------------------------------------------------ consensus_6745#1 AAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCA 120 consensus_6745#0 ------------------------------------------------------------ consensus_6745#1 GTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATG 180 consensus_6745#0 ------------------------------------------------------------ consensus_6745#1 AAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTT 240 consensus_6745#0 ------------------------------------------------------------ consensus_6745#1 TTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAA 300 consensus_6745#0 -------AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 53 consensus_6745#1 TGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 360 ***************************************************** consensus_6745#0 TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAA 113 consensus_6745#1 TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAA 420 ****************************************** ************* *** consensus_6745#0 TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 173 consensus_6745#1 TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 480 ************************************************************ consensus_6745#0 TTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACT 233 consensus_6745#1 TTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACT 540 *********************************** ************************ consensus_6745#0 GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 293 consensus_6745#1 GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 600 ************************************************************ consensus_6745#0 GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 353 consensus_6745#1 GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 660 ************************************************************ consensus_6745#0 CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 413 consensus_6745#1 CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 720 ************************************************************ consensus_6745#0 AACTATGAACCCATTCTGATGTTGGTTCCC-AAGTTGATGAATTTATTTCATTTA-ATTT 471 consensus_6745#1 AACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCC 780 ***************************** ******** * **** consensus_6745#0 TTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGAT 531 consensus_6745#1 TCGGAG------------------------------------------------------ 786 * * ** consensus_6745#0 TGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTC 591 consensus_6745#1 ------------------------------------------------------------ consensus_6745#0 TTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTA 651 consensus_6745#1 ------------------------------------------------------------ consensus_6745#0 TTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGT 711 consensus_6745#1 ------------------------------------------------------------ consensus_6745#0 ACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTC 771 consensus_6745#1 ------------------------------------------------------------ consensus_6745#0 TGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGT 831 consensus_6745#1 ------------------------------------------------------------ consensus_6745#0 CATTTTATGTAATGGAGGAACA 853 consensus_6745#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||