cluster # 6751

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6751 cluster # 6751 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6751#0 length = 566 sequences # 2

consensus_6751#1 length = 138 sequences # 2

consensusID : consensus_6751#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence

                              [GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAAACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAAA]

[+] EMBL CD081403             [GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAAACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAA ]
[-] EMBL CD075234             [          aACTAAAATTGATCTTGATCATGATGAAAAAATCAGTATGACTGAATTAAAGAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAAA]




>consensus_6751#0
GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAA
ACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTAT
TTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAA
AAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTG
CATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTG
AACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATA
ATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCG
GGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAG
ATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTT
CGATTATATTCATAACAATAAAGAAA

consensusID : consensus_6751#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 138
fasta sequence

                              [AATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACATNGCATTTTTTTCCAGAGTTGATCTTNGATCATGATGAAAAAATCAGTATGACTGATAAAAAGAATTATGTTGAAACAAATAATTTAGGCGAA]

[+] EMBL SMAA69246            [AATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACATNGCATTTTTTTCCAGAGTTGATCTTNGATCATGATGAAAAAATCAGTATGACTGATAA                                  ]
[+] EMBL SMAA69209            [ ATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACAT GCATTTTTTGC   AGTTGATCTT GATCATGATGAAAAAATCAGTATGACTGAATTAAAGAATTATGTTGAAACAAATAATTTAGGCGAA]




>consensus_6751#1
AATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACATNGCATTTTTTTCCA
GAGTTGATCTTNGATCATGATGAAAAAATCAGTATGACTGATAAAAAGAATTATGTTGAA
ACAAATAATTTAGGCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6751#0      GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAA 60
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      ACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTAT 120
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      TTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAA 180
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      AAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTG 240
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      CATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTG 300
consensus_6751#1      -----------------AATTTACTTTAAATCATTGTT--CAATTGAATGGATCCATTTT 41
                                       * *  **   **** * * *     **   **  *   *  * 

consensus_6751#0      AACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATA 360
consensus_6751#1      TACATNGCATTTTTTTCCAGAGTTGATCTTN-GATCATGATGAAAAAATCAGTATGACTG 100
                       ***    *  * ***   *  *  * **   **** **** * ***   * *  *  * 

consensus_6751#0      ATTTAAA--ATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACG 418
consensus_6751#1      ATAAAAAGAATTATGTTGAAACAAATAATTTAGGCGAA---------------------- 138
                      **  ***  ******   * * ***   * * * * **                      

consensus_6751#0      CGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACG 478
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      AGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTT 538
consensus_6751#1      ------------------------------------------------------------
                                                                                  

consensus_6751#0      TTCGATTATATTCATAACAATAAAGAAA 566
consensus_6751#1      ----------------------------