cluster # 6753

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Schistosoma mansoni
cluster # 6753 cluster # 6753 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6753#0 length = 768 sequences # 3

consensus_6753#1 length = 222 sequences # 1

consensusID : consensus_6753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 768
fasta sequence

                              [GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAAT-AATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTGTATTGCTTACC-ATGCATATGAAAT-AACTATGTAANTATTNTAAATATACCT]

[+] EMBL CD081473             [GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAAT AATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTGTATTGCTTACC ATGCATATGAAAT AACTATGTAANTATTNTAAATATAC  ]
[+] EMBL AA629513             [                                                                                                AAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTNTATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACCTTAATCAGATATAATGCAAATATAAATGCCGAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTAT                                                                                                                                                                                                                                  ]
[-] EMBL CD075297             [                                                                                                                                                                                                                                                                                   TCTNTAAATTG TTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAATAAATTTCATATTCTGATCATCCACTTCACATGCTCACCAATATTGTATTGCTTACCAATGCATATGAAATAAACTATGTAAATATTTTAAATATAACT]




>consensus_6753#0
GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGGCGT
GGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTAC
AAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTC
GAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATC
CAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCA
ATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGG
ATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCA
AAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTA
TACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTA
CTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAA
CGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATC
ACTTGATTTCAATAATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTGTAT
TGCTTACCATGCATATGAAATAACTATGTAANTATTNTAAATATACCT

consensusID : consensus_6753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [ATGCAATGTATCAAAACCAGGAATTTTCGATGTCAGTGGTCGAAAAAAATGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT]

[-] EMBL CD147385             [ATGCAATGTATCAAAACCAGGAATTTTCGATGTCAGTGGTCGAAAAAAATGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT]




>consensus_6753#1
ATGCAATGTATCAAAACCAGGAATTTTCGATGTCAGTGGTCGAAAAAAATGGTGGGCGTG
GCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACA
AGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCG
AATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6753#0      ---GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGG 57
consensus_6753#1      ATGCAATGTATCAAAACCAGGAATTTTCGA--TGTCAGTGGTCGAAAAAAAT--GGTGGG 56
                          ***    **  *  *    *** ***  * *  ** ** *   **  *  ******

consensus_6753#0      CGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGC 117
consensus_6753#1      CGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGC 116
                      ************************************************************

consensus_6753#0      TACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCA 177
consensus_6753#1      TACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCA 176
                      ************************************************************

consensus_6753#0      GTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCC 237
consensus_6753#1      GTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT-------------- 222
                      **********************************************              

consensus_6753#0      ATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAG 297
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      CCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCAT 357
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      CGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATG 417
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      CCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAG 477
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      TTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATT 537
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      TTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGAT 597
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      CAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATG 657
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      ATCACTTGATTTCAATAATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTG 717
consensus_6753#1      ------------------------------------------------------------
                                                                                  

consensus_6753#0      TATTGCTTACCATGCATATGAAATAACTATGTAANTATTNTAAATATACCT 768
consensus_6753#1      ---------------------------------------------------