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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence
[TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT-AAAATGNATTTGNNTTCTACATGAATTTACCTA-TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC-ATGGGTTTCCATAAATC-ATNGATAAT-AATCTAGTGCC]
[+] EMBL CD081491 [TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT AAAATGNATTTGNNTTCTACATGAATTTACCTA TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC ATGGGTTTCCATAAATC ATNGATAAT AATCTAGTGCC]
[-] EMBL CD075315 [ TCCTTGGAATACCAAAANAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTT AAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTAACTTATCATCCCGGGAACTACCAACTTCTTCAGTAAATTTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGTTTGTAAAAATGATTTTGTTTTCTACATGATTTTA CTATTTTGTCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATTCATCACAGTGTTAACTGTTAACTACTGTTTTTCTTCAATGTGTTTTCATTAATCAATTGATAATAAATCTAGTGtc]
consensusID : consensus_6754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence
[TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTA]
[+] EMBL CD184231 [TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTAT ]
[-] EMBL CD132362 [ AGGGAGACTACAACATGGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGG TATTTTCATTAGTTAAAAAAGAAAGAACTATTGAAC TATCTTCTCCTTC TGTAATTATTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6754#0 TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATC 60
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 AGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAG 120
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 CTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAAC 180
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 CCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTC 240
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 AATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCT 300
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 ACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGT-CTCTAAGGTGTGTAT 359
consensus_6754#1 ----------TTTCCTTATTTTATCA--AGTGCCGAAGTTCTGTACAATAAAGTCAGTGA 48
** * * ****** *** * ** *** * *** ** **
consensus_6754#0 ATTTTTTTCTATAAAGTATATTGT-TATACATAAAACTAAATAAAATGCTC-CAACAAAG 417
consensus_6754#1 ATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATG 108
** * ** ** * * * *** * * ** ** * **** *
consensus_6754#0 ATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATG-TTGTTTACTCTATT 476
consensus_6754#1 GATGCTTCA--CATTCTCTTTTGGAACAAGAAAACA-ACCGCAGGGCTGAAGAAATGTCG 165
* ** * ** * *** * ** * * ** * *** * ** *
consensus_6754#0 TGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACA 536
consensus_6754#1 CACAAGGTTTCATTGCTCAAGGCA-TATGCCAAAGATATTGAAACCGAATCCAAGTCACA 224
** **** * ** ***********************************
consensus_6754#0 AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 596
consensus_6754#1 AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 284
************************************************************
consensus_6754#0 TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 656
consensus_6754#1 TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 344
************************************************************
consensus_6754#0 TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 716
consensus_6754#1 TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 404
************************************************************
consensus_6754#0 ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 776
consensus_6754#1 ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 464
************************************************************
consensus_6754#0 GGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTC 836
consensus_6754#1 GGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAA-GAAAGAACTATTGAACTTATCTTC 523
******************* *************** ************************
consensus_6754#0 TNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNT 896
consensus_6754#1 TCCTTCTTGTAATTATTGTA---------------------------------------- 543
* ******* ******** *
consensus_6754#0 TATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGTAAA 956
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 ATGNATTTGNNTTCTACATGAATTTACCTATTTGNCTACCCCCTCATTTCTTGAGATAGT 1016
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 CTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTCATGGGTTTCCA 1076
consensus_6754#1 ------------------------------------------------------------
consensus_6754#0 TAAATCATNGATAATAATCTAGTGCC 1102
consensus_6754#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||