These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence [TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT-AAAATGNATTTGNNTTCTACATGAATTTACCTA-TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC-ATGGGTTTCCATAAATC-ATNGATAAT-AATCTAGTGCC] [+] EMBL CD081491 [TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT AAAATGNATTTGNNTTCTACATGAATTTACCTA TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC ATGGGTTTCCATAAATC ATNGATAAT AATCTAGTGCC] [-] EMBL CD075315 [ TCCTTGGAATACCAAAANAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTT AAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTAACTTATCATCCCGGGAACTACCAACTTCTTCAGTAAATTTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGTTTGTAAAAATGATTTTGTTTTCTACATGATTTTA CTATTTTGTCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATTCATCACAGTGTTAACTGTTAACTACTGTTTTTCTTCAATGTGTTTTCATTAATCAATTGATAATAAATCTAGTGtc] consensusID : consensus_6754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTA] [+] EMBL CD184231 [TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTAT ] [-] EMBL CD132362 [ AGGGAGACTACAACATGGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGG TATTTTCATTAGTTAAAAAAGAAAGAACTATTGAAC TATCTTCTCCTTC TGTAATTATTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6754#0 TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATC 60 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 AGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAG 120 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 CTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAAC 180 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 CCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTC 240 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 AATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCT 300 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 ACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGT-CTCTAAGGTGTGTAT 359 consensus_6754#1 ----------TTTCCTTATTTTATCA--AGTGCCGAAGTTCTGTACAATAAAGTCAGTGA 48 ** * * ****** *** * ** *** * *** ** ** consensus_6754#0 ATTTTTTTCTATAAAGTATATTGT-TATACATAAAACTAAATAAAATGCTC-CAACAAAG 417 consensus_6754#1 ATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATG 108 ** * ** ** * * * *** * * ** ** * **** * consensus_6754#0 ATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATG-TTGTTTACTCTATT 476 consensus_6754#1 GATGCTTCA--CATTCTCTTTTGGAACAAGAAAACA-ACCGCAGGGCTGAAGAAATGTCG 165 * ** * ** * *** * ** * * ** * *** * ** * consensus_6754#0 TGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACA 536 consensus_6754#1 CACAAGGTTTCATTGCTCAAGGCA-TATGCCAAAGATATTGAAACCGAATCCAAGTCACA 224 ** **** * ** *********************************** consensus_6754#0 AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 596 consensus_6754#1 AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 284 ************************************************************ consensus_6754#0 TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 656 consensus_6754#1 TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 344 ************************************************************ consensus_6754#0 TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 716 consensus_6754#1 TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 404 ************************************************************ consensus_6754#0 ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 776 consensus_6754#1 ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 464 ************************************************************ consensus_6754#0 GGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTC 836 consensus_6754#1 GGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAA-GAAAGAACTATTGAACTTATCTTC 523 ******************* *************** ************************ consensus_6754#0 TNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNT 896 consensus_6754#1 TCCTTCTTGTAATTATTGTA---------------------------------------- 543 * ******* ******** * consensus_6754#0 TATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGTAAA 956 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 ATGNATTTGNNTTCTACATGAATTTACCTATTTGNCTACCCCCTCATTTCTTGAGATAGT 1016 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 CTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTCATGGGTTTCCA 1076 consensus_6754#1 ------------------------------------------------------------ consensus_6754#0 TAAATCATNGATAATAATCTAGTGCC 1102 consensus_6754#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||