cluster # 6757

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Schistosoma mansoni
cluster # 6757 cluster # 6757 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6757#0 length = 623 sequences # 3

consensus_6757#1 length = 595 sequences # 1

consensusID : consensus_6757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 623
fasta sequence

                              [TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA-TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTTCAATTATTT]

[+] EMBL CD081501             [TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT          ]
[+] EMBL CD080153             [                         gacATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTTCAATTATTT]
[-] EMBL CD075326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCATTTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGCCAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTT         ]




>consensus_6757#0
TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGC
TGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGA
TGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTAC
TGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGA
TCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCT
TACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATC
ATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATC
AAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCC
AATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGC
TAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTT
AATCATTATTACTTCAATTATTT

consensusID : consensus_6757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT]

[+] EMBL CD080297             [CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT]




>consensus_6757#1
CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGCTGATGATGATGGTGATGA
TGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATT
AAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCC
ACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAA
ACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCC
AATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATAT
AATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGA
ACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGG
ACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGA
TGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6757#0      TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGC 60
consensus_6757#1      ------------------CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGC 42
                                        * ** ***  *    * ** *     ****************

consensus_6757#0      TGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGA 120
consensus_6757#1      TGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGA 102
                      ************************************************************

consensus_6757#0      TGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTAC 180
consensus_6757#1      TGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTAC 162
                      ************************************************************

consensus_6757#0      TGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGA 240
consensus_6757#1      TGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGA 222
                      ************************************************************

consensus_6757#0      TCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCT 300
consensus_6757#1      TCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCT 282
                      ************************************************************

consensus_6757#0      TACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATC 360
consensus_6757#1      TACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATC 342
                      ************************************************************

consensus_6757#0      ATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATC 420
consensus_6757#1      ATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATC 402
                      ************************************************************

consensus_6757#0      AAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCC 480
consensus_6757#1      AAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCC 462
                      ************************************************************

consensus_6757#0      AATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGC 540
consensus_6757#1      AATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGC 522
                      ************************************************************

consensus_6757#0      TAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTT 600
consensus_6757#1      TAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTT 582
                      ************************************************************

consensus_6757#0      AATCATTATTACTTCAATTATTT 623
consensus_6757#1      AATCATTATTACT---------- 595
                      *************