cluster # 6758

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Schistosoma mansoni
cluster # 6758 cluster # 6758 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6758#0 length = 548 sequences # 2

consensus_6758#1 length = 524 sequences # 2

consensusID : consensus_6758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 548
fasta sequence

                              [CACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAGATGAAAAAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCAGCACTTGCCGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCCATGATTAGTCATTTCTTGTATACATGAACGACTTTCAACATCCCAAACACGGATAGAGGCATCATGACTTCCAGTCAATAAATACAGACCGTGAGGATCGACTGCAAGGCTTGTAACGGCATTCAAATGTGTAACCATAGCGTCTACACATGCCGAATTTGTAACTGATGAACGATCGGACATGCGATTGATATCATAGAACCGAATACAACGGTCTTCATGAGCTCCAATAACCAGAGATAATGTTTGGTGTGAACCCAGAGCATTAAGTGAACGTTCTGTCCAACCAGAAGGTAAACT]

[+] EMBL CD178154             [CACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAGATGAAAAAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCAGCACTTGCCGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCCATGATTAGTCATTTCTTGTATACATGAACGACTTTCAACATCCCAAACACGGATAGAGGCATCATGACTTCCAGTCAATAAATACAGACCGTGAGGATCGACTGCAAGGCTTGTAACGGCATTCAAATGTGTAACCATAGCGTCTACACATGCCGAATTTGTAACTGATGAACGATCGGACATGCGATTGATATCATAGAACCGAATACAACGGTCTTCATGAGCTCCAATAACCAGAGATAATGTTTGGTGT                                               ]
[+] EMBL CD124470             [                                                                                                                                                                                           ctGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCCATGATTAGTCATTTCTTGTATACATGAACGACTTTCAACATCCCAAACACGGATAGAGGCATCATGACTTCCAGTCAATAAATACAGACCGTGAGGATCGACTGCAAGGCTTGTAACGGCATTCAAATGTGTATCCATAGCGTCTACACATGCCGAATTTGTAACTGATGAACGATCGGACATGCGATTGATATCATAGAACCGAATACAACGGTCTTCATGAGCTCCAATATCCAGAGATAATGTTTGGTGTGAACCCAGAGCATTAAGTGAACGTTCTGTCCAACCAGAAGGTAAACT]




>consensus_6758#0
CACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAA
AAGATGAAAAAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATC
GAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCA
GCACTTGCCGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATAT
TTGAATCCATGATTAGTCATTTCTTGTATACATGAACGACTTTCAACATCCCAAACACGG
ATAGAGGCATCATGACTTCCAGTCAATAAATACAGACCGTGAGGATCGACTGCAAGGCTT
GTAACGGCATTCAAATGTGTAACCATAGCGTCTACACATGCCGAATTTGTAACTGATGAA
CGATCGGACATGCGATTGATATCATAGAACCGAATACAACGGTCTTCATGAGCTCCAATA
ACCAGAGATAATGTTTGGTGTGAACCCAGAGCATTAAGTGAACGTTCTGTCCAACCAGAA
GGTAAACT

consensusID : consensus_6758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [AACTACTAAATTTATGAAAACAAATTAACAACAAAAGAAACGATAAAGTGCCAAAAACGTAATAAATAGACAAAGTGAATACACCCCAAGTGATTAATAAACTGTAATTGTTAGCAATACTATAATATTTATCAAAGCCTTTCCAACATTACGGTAGGTATGTATGAAAATGGGATAAATAGATCAAATTATATATAAAGATACTTTTTCTACAATTAAAAAAGAAACATTGGGATGAAAAGATATACATACACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAAATGAAATAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCAGCACTTGCTGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCCACCCTCGTGCCGAATTNCAGGCTCC]

[+] EMBL CD075342             [AACTACTAAATTTATGAAAACAAATTAACAACAAAAGAAACGATAAAGTGCCAAAAACGTAATAAATAGACAAAGTGAATACACCCCAAGTGATTAATAAACTGTAATTGTTAGCAATACTATAATATTTATCAAAGCCTTTCCAACATTACGGTAGGTATGTATGAAAATGGGATAAATAGATCAAATTATATATAAAGATACTTTTTCTACAATTAAAAAAGAAACATTGGGATGAAAAGATATACATACACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAAATGAAATAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCAGCACTTGCTGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCC                         ]
[-] EMBL CD081519             [ ACTACTAAATTTATGAAAACAAATTAACAACAAAAGAAACGATAAAGTGCCAAAAACGTAATAAATAGACAAAGTGAATACACCCCAAGTGATTAATAAACTGTAATTGTTAGCAATACTATAATATTTATCAAAGCCTTTCCAACATTACGGTAGGTATGTATGAAAATGGGATAAATAGATCAAATTATATATAAAGATACTTTTTCTACAATTAAAAAAGAAACATTGGGATGAAAAGATATACATACACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAAATGAAATAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCAGCACTTGCTGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTATATTTGAATCCACCCTCGTGCCGAATTNCAGGCTCC]




>consensus_6758#1
AACTACTAAATTTATGAAAACAAATTAACAACAAAAGAAACGATAAAGTGCCAAAAACGT
AATAAATAGACAAAGTGAATACACCCCAAGTGATTAATAAACTGTAATTGTTAGCAATAC
TATAATATTTATCAAAGCCTTTCCAACATTACGGTAGGTATGTATGAAAATGGGATAAAT
AGATCAAATTATATATAAAGATACTTTTTCTACAATTAAAAAAGAAACATTGGGATGAAA
AGATATACATACACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATG
AAAACAATGAAAAAATGAAATAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAG
AGAATATCATCGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAG
CATCTGCTCCAGCACTTGCTGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGG
ATTCATTATATTTGAATCCACCCTCGTGCCGAATTNCAGGCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6758#0      CACAGTAGATGGGGGGAAAAATATATCAACCGAACATTAATGTCATATGAAAACAATGAA 60
consensus_6758#1      -------------------------------AACTACTAAATT--TATGAAAACAAATTA 27
                                                      *  * ***  *  ***********   *

consensus_6758#0      AAGATGAAAAAAAAACGAAAATTACAAATGGTCGGGTATTTTTGTGAAGAGAATATCATC 120
consensus_6758#1      ACAACAAAAGAAACGATAAAGTGCCAAA-AACGTAATAAATAGACAAAGTGAATACACCC 86
                      *  *  *** ***    *** *  ****        **  *     *** *****    *

consensus_6758#0      GAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCATCTGCTCCA 180
consensus_6758#1      CAAGTG--ATTAATAAACT--GTAATTGTTAGCAATACT------ATAATATTTATCAAA 136
                       ** **  ** *** *  *  ***  *****   * * *      ***  ** *     *

consensus_6758#0      GCACTTGCCGC-TAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCAT-TAT 238
consensus_6758#1      GCCTTTCCAACATTACGGTAGGTATGTATGAAAATGGGATAAATAGATCAAATTATATAT 196
                      **  ** *  * * * ** ** * ** *** ***     * ***  *   * * ** ***

consensus_6758#0      ATTTGAA-----TCCATGATTAGTCATTTCTTGTATACATGAACGACTTTCAACATCCCA 293
consensus_6758#1      AAAGATACTTTTTCTACAATTAAAAAAGAAACATTGGGATGAAAAGATATACATACACAG 256
                      *     *     ** *  ****   *       *    *****    * *  * *  *  

consensus_6758#0      AACACGGATAGAGGCATCATGACTTCCAGTCAATAAATACAGACCGTGAGGATCGACTGC 353
consensus_6758#1      TAGATGGGGGGAAAAAT-ATATCAACCGAACATTAATGTCATATGAAAACAATGAAAAAA 315
                       * * **   **   ** **  *  **   ** ***   ** *     *  **  *    

consensus_6758#0      AAGGCTTGTAACGGCATTCAAATGTGTAACCATAGCGTCTACACATGCCGAATTTGTAAC 413
consensus_6758#1      TGAAATAAAAACGAAAATTACAAATG-----GTCGGGTATTTTTGTGAAGAGAATATCAT 370
                           *   ****  * * * *  **      * * ** *     **  **   * * * 

consensus_6758#0      TGA--TGAA--CGATCGGACATGCGATTGATATCATAGAACCGAATACAACGGTCTTCAT 469
consensus_6758#1      CGAAATGAAATCAATCATTTATGTAGCTGTTACATAAATTTTGCATATAGCA-TCTGCTC 429
                       **  ****  * ***    ***    ** **    *     * *** * *  *** *  

consensus_6758#0      GAGCTCCAATAACCAGAGATAATGTTTGGTGTGAACCCAGAGCATTAAGTGAA-CGTTCT 528
consensus_6758#1      CAGCACTTGCTGCTAAAGGAAGTTGTGGATGTAAAGCTACTGAATGAACGGATTCATTAT 489
                       *** *      * * **  * *  * * *** ** * *  * ** **  **  * ** *

consensus_6758#0      GT------CCAACCAGAAGGTAAACT--------- 548
consensus_6758#1      ATTTGAATCCACCCTCGTGCCGAATTNCAGGCTCC 524
                       *      *** **    *   ** *