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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1101 fasta sequence
[CGGAGCCATTAATTCGGCACGAGGTGTTTTAGGAACAAATCCGAGGATGGATCAGTTGTACTCTTTTGTTTCCGTATGTTTTCTTTGTCCGTACATGTGGATTGTTGTTGCTGTCGGTGCATTGTATATTATCAAGAGAGAATACTTCGGTCATTGCGAGTGTACTCTTGAGGATCGTTTGGATGGTAAAACAGTTATTGTTACGGGATGCAATACTGGTATTGGATTAGAAACAGTCAATGAGTTGGCTCATCGTGGGGCCCGTGTTATAATGGCATGCAGAGATCTAAGGAAGTGCGAATTAGCTCGACAGGAGCTTCTGACTAGAACTTGTAATGAGAAGCCATCGGTACTCAGTGTTCATTTGGAACCAGATCAACTTATCTGTGAAGAGTTGGATCTGGAGTCACCAAGATCTATTCGAGAGTTTGCGAATCGTATCATTAGTAGAGAAAAATCAATTCCTATCTTAATTAATAATGCTGGGGCAGATTTTCCGGAGAAGATTTACGATGAGCTTGGGATTGAGAAACACTTGAAAGTGAATCATCTGGGTCATTTTCTGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTCTGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATTACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGATGAATGTGATTCATGCGCGTGAGATTTGNCAACGCTGGTCTGAGGATGGAATTATTTCAGTCAGCGTTCATCCAGGCTTAGTGAGAACATCCATTNTTCGTTCATGCAAAGGGGAATATTTTTTAGTCTACTATTTATTTCGATGGTTGACAAAACATCTCGTGAAGTGCTCAGATACAGTATTTTGGTCCTGATAAAATCTGATTCCTGTGCATTTATTCTGGTGTCACCACGAGGTGTATTCTCAGCATAATGACAAATTGCATCATGTGTGAAACTCGGAGCGCTATGACGATGGATATTTGTCGAGTAAATTGAAAATTGTATACTAAGGTGGTAAATATGACTGAATGCCTGACTATAATTCGCTTGTAGGAACTAA]
[+] EMBL CD081612 [CGGAGCCATTAATTCGGCACGAGGTGTTTTAGGAACAAATCCGAGGATGGATCAGTTGTACTCTTTTGTTTCCGTATGTTTTCTTTGTCCGTACATGTGGATTGTTGTTGCTGTCGGTGCATTGTATATTATCAAGAGAGAATACTTCGGTCATTGCGAGTGTACTCTTGAGGATCGTTTGGATGGTAAAACAGTTATTGTTACGGGATGCAATACTGGTATTGGATTAGAAACAGTCAATGAGTTGGCTCATCGTGGGGCCCGTGTTATAATGGCATGCAGAGATCTAAGGAAGTGCGAATTAGCTCGACAGGAGCTTCTGACTAGAACTTGTAATGAGAAGCCATCGGTACTCAGTGTTCATTTGGAACCAGATCAACTTATCTGTGAAGAGTTGGATCTGGAGTCACCAAGATCTATTCGAGAGTTTGCGAATCGTATCATTAGTAGAGAAAAATCAATTCCTATCTTAATTAATAATGCTGGGGCAGATTTTCCGGAGAAGATTTACGATGAGCTTGGGATTGAGAAACACTTGAAAGTGAATCATCTGGGTCATTTTCTGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTCTGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATTACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGATGAATGTGATTCATGCGCGTGAGATTTGNCAACGCTGGTCTGAGGATGGAATTATTTCAGTCAGCGTTCATCCAGGCTTAGTGAGAACATCCATTNTTCGTTCATGCAAAGGGGAATATTTTTTAGTCTACTATTTATTTCGATGGTTGACAAAACATCTCGTGAAGTGCTCAGATACAGTATTTTGGTCCTGATAAAATCTGATTCCTGTGCATTTATTCTGGTGTCACCACGAGGTGTATTCTCAGCATAATGACAAATTGCATCATGTGTGAAACTCGGAGCGCTATGACGATGGATATTTGTCGAGTAAATTGAAAATTGTATACTAAGGTGGTAAATATGACTGAATGCCTGACTATAATTCGCTTGTAGGAACTAA]
[+] EMBL CD188569 [ GTTGGATCTGGAGTCACCAAGATCTATTCGAGAGTTTGCGAATCGTATCATTAGTAGAGAAAAATCAATTCCTATCTTAATTAATAATGCTGGGGCAGATTTTCCGGAGAAGATTTACGATGAGCTTGGGATTGAGAAACACTTGAAAGTGAATCATCTGGGTCATTTTCTGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTCTGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATTACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGATGAATGTGATTCATGCGCGTGAGATTTGCAAACGCTGGTCTGAGGATGGAATTATTTCAGT ]
consensusID : consensus_6765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[TGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTCTGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATTACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGATGAATGTGATTCATGCGCGTGAGATTTGCAAACGCTGGTCTGAGGATGGAATTATTTCAGTCAGCGTTCATCCAGGCTTAGTGAGAACATCCATTTTTCGTTCATGCAAAGGGAAATATTTTTTAGTCTACTATTTATTTCGATGGTTGACAAAAACATCTCGTGAAGGTGCTCAGACTACAGTATTTTGTGTCCTTGATAAAAATCTGATTCCTGGTGCATTTTATTCTGAGTGTCGACCACGTAGGTGTAATTCTCAAGCATTAAATGACGAAATTTGCAATCATGTGTGGAAAACTTCGGAAGCGCTTATTGACGAGTGGGAATCATTTGGTCAGAAGTAGAATTTGAAAATATTTGTTATTACTAAGTGCTGTGTTAAATTAATGACATGTAAATGCCACTGAGCTCATAAATTTTCGTCTTGCTTATGTGAAACAATAAAACATTT]
[-] EMBL CD075435 [TGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTCTGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATTACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGATGAATGTGATTCATGCGCGTGAGATTTGCAAACGCTGGTCTGAGGATGGAATTATTTCAGTCAGCGTTCATCCAGGCTTAGTGAGAACATCCATTTTTCGTTCATGCAAAGGGAAATATTTTTTAGTCTACTATTTATTTCGATGGTTGACAAAAACATCTCGTGAAGGTGCTCAGACTACAGTATTTTGTGTCCTTGATAAAAATCTGATTCCTGGTGCATTTTATTCTGAGTGTCGACCACGTAGGTGTAATTCTCAAGCATTAAATGACGAAATTTGCAATCATGTGTGGAAAACTTCGGAAGCGCTTATTGACGAGTGGGAATCATTTGGTCAGAAGTAGAATTTGAAAATATTTGTTATTACTAAGTGCTGTGTTAAATTAATGACATGTAAATGCCACTGAGCTCATAAATTTTCGTCTTGCTTATGTGAAACAATAAAACATTT]
[-] EMBL CD077172 [ GACTACAGTATTTTGTGCCCCTGATAAAAATTTGATTCCTGGTGCATTTTATTTTGAGTGTCGACCACGTAGGTGTAATTCTCAAGCATTAAATGACGAAATTTGCAATCATGTGTGGAAAACTTCGGAAGCGCCTATTGACGAGTGGGAATCCTTTGGTCAGAAGTAGAATTTGAAAATTTTTGTTATTACTAAGTGCTGTGTTAAATTAATGACATGTAAATGCCCCTGAGCTCATAAATTTTCGTCTTGCTTATGTGAAACCATAAAACc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6765#0 CGGAGCCATTAATTCGGCACGAGGTGTTTTAGGAACAAATCCGAGGATGGATCAGTTGTA 60
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 CTCTTTTGTTTCCGTATGTTTTCTTTGTCCGTACATGTGGATTGTTGTTGCTGTCGGTGC 120
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 ATTGTATATTATCAAGAGAGAATACTTCGGTCATTGCGAGTGTACTCTTGAGGATCGTTT 180
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 GGATGGTAAAACAGTTATTGTTACGGGATGCAATACTGGTATTGGATTAGAAACAGTCAA 240
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 TGAGTTGGCTCATCGTGGGGCCCGTGTTATAATGGCATGCAGAGATCTAAGGAAGTGCGA 300
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 ATTAGCTCGACAGGAGCTTCTGACTAGAACTTGTAATGAGAAGCCATCGGTACTCAGTGT 360
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 TCATTTGGAACCAGATCAACTTATCTGTGAAGAGTTGGATCTGGAGTCACCAAGATCTAT 420
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 TCGAGAGTTTGCGAATCGTATCATTAGTAGAGAAAAATCAATTCCTATCTTAATTAATAA 480
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 TGCTGGGGCAGATTTTCCGGAGAAGATTTACGATGAGCTTGGGATTGAGAAACACTTGAA 540
consensus_6765#1 ------------------------------------------------------------
consensus_6765#0 AGTGAATCATCTGGGTCATTTTCTGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTC 600
consensus_6765#1 -----------------------TGCTTACTAAATTATTAAAGCCGTGTTTGAAAGCCTC 37
*************************************
consensus_6765#0 TGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATT 660
consensus_6765#1 TGATGGAGAACCTTGTCGTGTAATTATTCTCTCATCTTTGTCACATTGGTTTGCTAAATT 97
************************************************************
consensus_6765#0 ACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGAT 720
consensus_6765#1 ACACCCGAATAGCGGGTTTTTGTCAGGTGTAGGCTCTGGTTATGCTATTAGCAAGCTGAT 157
************************************************************
consensus_6765#0 GAATGTGATTCATGCGCGTGAGATTTGNCAACGCTGGTCTGAGGATGGAATTATTTCAGT 780
consensus_6765#1 GAATGTGATTCATGCGCGTGAGATTTGCAAACGCTGGTCTGAGGATGGAATTATTTCAGT 217
*************************** *******************************
consensus_6765#0 CAGCGTTCATCCAGGCTTAGTGAGAACATCCATTNTTCGTTCATGCAAAGGGGAATATTT 840
consensus_6765#1 CAGCGTTCATCCAGGCTTAGTGAGAACATCCATTTTTCGTTCATGCAAAGGGAAATATTT 277
********************************** ***************** *******
consensus_6765#0 TTTAGTCTACTATTTATTTCGATGGTTGACAAAA-CATCTCGTGAAG-TGCTCAGA-TAC 897
consensus_6765#1 TTTAGTCTACTATTTATTTCGATGGTTGACAAAAACATCTCGTGAAGGTGCTCAGACTAC 337
********************************** ************ ******** ***
consensus_6765#0 AGTATTTTG-GTCCT-GATAAAA-TCTGATTCCTG-TGCATTT-ATTCTG-GTGTC-ACC 950
consensus_6765#1 AGTATTTTGTGTCCTTGATAAAAATCTGATTCCTGGTGCATTTTATTCTGAGTGTCGACC 397
********* ***** ******* *********** ******* ****** ***** ***
consensus_6765#0 ACG-AGGTGTA-TTCTCA-GCAT--AATGACAAA--TTGCA-TCATGTGTG--AAACTC- 999
consensus_6765#1 ACGTAGGTGTAATTCTCAAGCATTAAATGACGAAATTTGCAATCATGTGTGGAAAACTTC 457
*** ******* ****** **** ****** ** ***** ********* *****
consensus_6765#0 -GGAGCGCTATGACGATGGATATTTGTCGAGTAAATTGAAAATTGTATACTAAGGTGGTA 1058
consensus_6765#1 GGAAGCGCT-TATTGACGAGTGGGAATC-ATTTGGTCAGAAGTAGAATTTGAAAATATTT 515
* ****** * ** * * ** * * * ** * * ** ** * *
consensus_6765#0 AATATGACTGAATGCCTGACTATAAT--TCGCTTGTAGGAACTAA--------------- 1101
consensus_6765#1 GTTATTACTAAGTGCTGTGTTAAATTAATGACATGTAAATGCCACTGAGCTCATAAATTT 575
*** *** * *** ** * * * * **** * *
consensus_6765#0 --------------------------------
consensus_6765#1 TCGTCTTGCTTATGTGAAACAATAAAACATTT 607
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||