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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence
[CCATTATNTCGGCACGAGGGATCATTATGTCCATTACAATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAATAAAANNNT]
[+] EMBL CD081789 [CCATTATNTCGGCACGAGGGATCATTATGTCCATTACAATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAATAAAANNNT]
[-] EMBL CD075520 [ TTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTTTGGAACGAGAGTAAAGAACATACTTTTTTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTTTGCAACGTGCGCTGACACATTCAATACCGATAACTTTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTTTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTTTGTCTTCAATGAAAATAAAAatt ]
[-] EMBL CD197697 [ ATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATT ]
consensusID : consensus_6771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNAATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAAT]
[-] EMBL CD151650 [AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNAATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6771#0 -----------------CCATTATNTCGGCACGAGGG-----ATCATTATGTCCATTACA 38
consensus_6771#1 AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNA 60
** * *** * * ***** **** *
consensus_6771#0 ATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAG 98
consensus_6771#1 ATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAG 120
********* ***** **************** ********* ************
consensus_6771#0 TATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTC 158
consensus_6771#1 TATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTC 180
************************************************************
consensus_6771#0 TCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATT 218
consensus_6771#1 TCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATT 240
************************************************************
consensus_6771#0 TGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAG 278
consensus_6771#1 TGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAG 300
************************************************************
consensus_6771#0 TTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTT 338
consensus_6771#1 TTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTT 360
************************************************************
consensus_6771#0 ATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAA 398
consensus_6771#1 ATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAA 420
************************************************************
consensus_6771#0 ACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAG 458
consensus_6771#1 ACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAG 480
************************************************************
consensus_6771#0 CAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTG 518
consensus_6771#1 CAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTG 540
*** ********************************************************
consensus_6771#0 ATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATA 578
consensus_6771#1 ATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATA 600
************************************************************
consensus_6771#0 ACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGA 638
consensus_6771#1 ACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGA 660
************************************************************
consensus_6771#0 GTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAG 698
consensus_6771#1 GTTTTGTAAAAGAATATTAACACTAAAT-------------------------------- 688
****************************
consensus_6771#0 AATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATA 758
consensus_6771#1 ------------------------------------------------------------
consensus_6771#0 AATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCG 818
consensus_6771#1 ------------------------------------------------------------
consensus_6771#0 TTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAA 878
consensus_6771#1 ------------------------------------------------------------
consensus_6771#0 TAAAANNNT 887
consensus_6771#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||