cluster # 6773

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Schistosoma mansoni
cluster # 6773 cluster # 6773 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6773#0 length = 584 sequences # 3

consensus_6773#1 length = 103 sequences # 1

consensusID : consensus_6773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence

                              [TTTTTNGNGNAANATANNTTGTTGTTAGAAATGCGNAGATAAATACAAGTAGTAATAATTATGTGACATCTTCAGATGCCTCTATTGTACCAGTGGAATTGATCATTTGCCTTGCAGTAACACCATCGGGAAAATGCTTTTGTACTAATTGTAGGAGTTGGTCAGCTTGACTGTTAGATAATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGATTGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATCCCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGCTTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGATAAGCTTCAGAACTTCGAGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCATTCAACTTGAATGATATTTTATCAGTTGGACTCTAAGTTTCGCTTAACTATCACAGCTCCTGTCCAGAATACGAATCCCCAAGATATGGAAACAAGGACGAAAC]

[+] EMBL CD075537             [TTTTTNGNGNAANATANNTTGTTGTTAGAAATGCGNAGATAAATACAAGTAGTAATAATTATGTGACATCTTCAGATGCCTCTATTGTACCAGTGGAATTGATCATTTGCCTTGCAGTAACACCATCGGGAAAATGCTTTTGTACTAATTGTAGGAGTTGGTCAGCTTGACTGTTAGATAATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGATTGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATCCCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGCTTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGATAAGCTTCAGAACTTCGAGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCATTCAACTTGAATGATATTTTATCAGTTGGACTCTAAGTTTCGCTTAACTATCACAGCTCCTGTCCAGAATACGAATCCCCAAGATATGGAAACAAG        ]
[-] EMBL CD081806             [                 atttaTGTTAG GATGAG AGATAAATACAAGTAGTAATAATTATGTGACATCTTCAGATGCCTCTAATGTACCAGTGGAATTGATCATTTGACTTGCAGTAACACCATCGGGAAAATGCTTTTGTACTAATTGTAGGAGTTGGTCAGCTTGACTGTTAGATAATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGATTGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATCCCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGCTTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGATAAGCTTCAGAACTTCGAGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCATTCAACTTGAATGATATTTTATCAGTTGGACTCTAAGTTTCGCTTAACTATCACAGCTCCTGTCCAGAATACGAATCCCCAAGATATGGAAACAAGGACGAAAC]
[-] EMBL CD155710             [                                                                                                                                                                       TGACTGTTAGATAATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGATTGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATCCCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGCTTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGATAAGCTTCAGAACTTCGTGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCATTCAACTTGAATGATATTTTATCAGTTGGACT                                                                        ]




>consensus_6773#0
TTTTTNGNGNAANATANNTTGTTGTTAGAAATGCGNAGATAAATACAAGTAGTAATAATT
ATGTGACATCTTCAGATGCCTCTATTGTACCAGTGGAATTGATCATTTGCCTTGCAGTAA
CACCATCGGGAAAATGCTTTTGTACTAATTGTAGGAGTTGGTCAGCTTGACTGTTAGATA
ATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGAT
TGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATC
CCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGC
TTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGA
TAAGCTTCAGAACTTCGAGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCA
TTCAACTTGAATGATATTTTATCAGTTGGACTCTAAGTTTCGCTTAACTATCACAGCTCC
TGTCCAGAATACGAATCCCCAAGATATGGAAACAAGGACGAAAC

consensusID : consensus_6773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 103
fasta sequence

                              [AGTCAAGCTGACCAACTCCTACAATTAGTACAAAAGCATTTTCCCGATGGTGTTCATCGAAGCTAAATGACTAATTCCACTGGTACATTAGACAACTATGAAG]

[+] EMBL AA938792             [AGTCAAGCTGACCAACTCCTACAATTAGTACAAAAGCATTTTCCCGATGGTGTTCATCGAAGCTAAATGACTAATTCCACTGGTACATTAGACAACTATGAAG]




>consensus_6773#1
AGTCAAGCTGACCAACTCCTACAATTAGTACAAAAGCATTTTCCCGATGGTGTTCATCGA
AGCTAAATGACTAATTCCACTGGTACATTAGACAACTATGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6773#0      TTTTTNGNGNAANATANNTTGTTGTTAGAAATGCGNAGATAAATACAAGTAGTAATAATT 60
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      ATGTGACATCTTCAGATGCCTCTATTGTACCAGTGGAATTGATCATTTGCCTTGCAGTAA 120
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      CACCATCGGGAAAATGCTTTTGTACTAATTGTAGGAGTTGGTCAGCTTGACTGTTAGATA 180
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      ATCGAGAATCCAAATCGCTGATTATTACTGATAGCTCCACTTGACTGCTGGGACAGTGAT 240
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      TGATAAGCATTAGGATTTCAGACTTTGTTAAATCAAATACCTTGACATCATTAGCAAATC 300
consensus_6773#1      -------------------------AGTCAAGCTGACCAACTCC-TACAATTAGTACAAA 34
                                                ** **    *  * **    *  ***** * *  

consensus_6773#0      CCTGTACTCCTGACTCTGTTTGTTTGCTACAAGGTGACTTGGTATTTAAATACTTTGCGC 360
consensus_6773#1      AGCATTTTCCCGATGGTGTTCATC-GAAGCTAAATGACTAATTCCACTGGTACATTAGAC 93
                          *  *** **   ****  *  *   * *  *****   *       *** **   *

consensus_6773#0      TTGTATACAATAGCGTTTGCTGGCGTCTGACTTTCTTTTTCGATTCAAGTTTATCTTTGA 420
consensus_6773#1      AACTATGAAG-------------------------------------------------- 103
                         ***  *                                                   

consensus_6773#0      TAAGCTTCAGAACTTCGAGATTTGTTAAAAGCCTGGGATTTTGGGGATCAATGAGCTCCA 480
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      TTCAACTTGAATGATATTTTATCAGTTGGACTCTAAGTTTCGCTTAACTATCACAGCTCC 540
consensus_6773#1      ------------------------------------------------------------
                                                                                  

consensus_6773#0      TGTCCAGAATACGAATCCCCAAGATATGGAAACAAGGACGAAAC 584
consensus_6773#1      --------------------------------------------