These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTA-TTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAAAGTCNNAC-AC-TTTACCT-AGGATCATCGAT-ACTAGTATTCC-TAC-ATAG-AAATACGGATCGGA-TAC-AC-AAGTGTGGA-AC-TGACAGG-AGTG-TTACTAT-AGAACTTTG-AGTAGTATTT--ACTT-ACTAC-TATNC-ACCTGT-AACTGA-TTTTCTG-ATCAAA-G-TGCTG-TNCTG-AT-AGTAGTAG-GAT-CATC-ATACTACTTTTAC] [+] EMBL CD081834 [AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTA TTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAAAGTCNNAC AC TTTACCT AGGATCATCGAT ACTAGTATTCC TAC ATAG AAATACGGATCGGA TAC AC AAGTGTGGA AC TGACAGG AGTG TTACTAT AGAACTTTG AGTAGTATTT ACTT ACTAC TATNC ACCTGT AACTGA TTTTCTG ATCAAA G TGCTG TNCTG AT AGTAGTAG GAT CATC ATACT ] [-] EMBL CD075555 [ AGTATTTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTC GACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACGATAGAAAATACGGATCGGAGTACAACAAAGTGTGGAGACGTGACAGGAAGTGTTTACTATAAGAACTTTGTAGTAGTATTTTAACTTAACTACATATCCAACCTGTAAACTGATTTTTCTGCATCAAATGTTGCTGTTTCTGTATAAGTAGTAGTGATACATCAATA AACTTTTAC] consensusID : consensus_6775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [ATTCGGCACGAGGTCATCAGGCGTTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATACTCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGGTGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTAAAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC] [+] EMBL CD083166 [ATTCGGCACGAGGTCATCAGGCGTTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATACTCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGGTGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTAAAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC] consensusID : consensus_6775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [AGCCTTCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA] [+] EMBL CD137070 [AGCCTTCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6775#0 AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCA 60 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 ------------------------------------------------------------ consensus_6775#0 TAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATC 120 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 ------------------------------------------------------------ consensus_6775#0 CATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGG 180 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 ------------------------------------------------------------ consensus_6775#0 TAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGA 240 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 ------------------------------------------------------------ consensus_6775#0 TATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCT 300 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 -------------------------------------ATTCGGCACGAGGTCATCAGGCG 23 consensus_6775#0 GTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCA 360 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 TTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATAC 83 consensus_6775#0 ATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCG 420 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 TCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGG 143 consensus_6775#0 TCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGA 480 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 TGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAAC 203 consensus_6775#0 TAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAA 540 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 CCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAA 263 consensus_6775#0 TAACACACATAACTTCCATAATAACAC--ATCATTACCCAGACGGAGTAAACAATATATA 598 consensus_6775#2 ----------AGCCTTCATAATAACAC--ATCATTACCCAGACGGAGTAAACAATATATA 48 consensus_6775#1 ATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATG 323 * ** *** * * * ** *** ** ** ** consensus_6775#0 CAGATTCAGCGAATCCAAATGATATGCACAAACAACAG-ATTATTGAGAAATATGGTGAA 657 consensus_6775#2 CAGATTCAGCGAATCCAAATGATATGCACAAACAACAG-ATTATTGAGAAATATGGTGAA 107 consensus_6775#1 CACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAG 383 ** ** *** * * * * * * **** ** * **** * consensus_6775#0 CACTTTGC-GATGATGGTGTGAAGGAAAGTCNNACACTTT-ACCTA-GGATCATCGATA- 713 consensus_6775#2 CACTTTGC-GATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAA 166 consensus_6775#1 CAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTA 443 ** ** * * ** * **** ** * * * * * * * consensus_6775#0 CTAGTATTCCTA--CATA-GAAATACGGATCGGA-TACACAAGTGTGGAACTGACAGGAG 769 consensus_6775#2 CTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA----------------------- 203 consensus_6775#1 AAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAG 503 ***** * * * * *** * * ** consensus_6775#0 TGTTACTATAGAACTTTGAGTAGTATTTACTTACTACTATNCACCTGTAACTGATTTTCT 829 consensus_6775#2 ------------------------------------------------------------ consensus_6775#1 TGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATC 563 consensus_6775#0 GATCAAAGTGCTGTNCTGATAGTAGTAGGATCATCATACTACTTTTAC----------- 877 consensus_6775#2 ----------------------------------------------------------- consensus_6775#1 AGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC 622 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||