cluster # 6775

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6775 cluster # 6775 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6775#0 length = 877 sequences # 2

consensus_6775#1 length = 622 sequences # 1
consensus_6775#2 length = 203 sequences # 1

consensusID : consensus_6775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 877
fasta sequence

                              [AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTA-TTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAAAGTCNNAC-AC-TTTACCT-AGGATCATCGAT-ACTAGTATTCC-TAC-ATAG-AAATACGGATCGGA-TAC-AC-AAGTGTGGA-AC-TGACAGG-AGTG-TTACTAT-AGAACTTTG-AGTAGTATTT--ACTT-ACTAC-TATNC-ACCTGT-AACTGA-TTTTCTG-ATCAAA-G-TGCTG-TNCTG-AT-AGTAGTAG-GAT-CATC-ATACTACTTTTAC]

[+] EMBL CD081834             [AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTA TTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAAAGTCNNAC AC TTTACCT AGGATCATCGAT ACTAGTATTCC TAC ATAG AAATACGGATCGGA TAC AC AAGTGTGGA AC TGACAGG AGTG TTACTAT AGAACTTTG AGTAGTATTT  ACTT ACTAC TATNC ACCTGT AACTGA TTTTCTG ATCAAA G TGCTG TNCTG AT AGTAGTAG GAT CATC ATACT        ]
[-] EMBL CD075555             [                                                                                                                                                                                                                                                                             AGTATTTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCAATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCGTCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGATAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAATAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTC GACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACGATAGAAAATACGGATCGGAGTACAACAAAGTGTGGAGACGTGACAGGAAGTGTTTACTATAAGAACTTTGTAGTAGTATTTTAACTTAACTACATATCCAACCTGTAAACTGATTTTTCTGCATCAAATGTTGCTGTTTCTGTATAAGTAGTAGTGATACATCAATA AACTTTTAC]




>consensus_6775#0
AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCA
TAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATC
CATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGG
TAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGA
TATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCT
GTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCA
ATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCG
TCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGA
TAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAA
TAACACACATAACTTCCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACA
GATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACAC
TTTGCGATGATGGTGTGAAGGAAAGTCNNACACTTTACCTAGGATCATCGATACTAGTAT
TCCTACATAGAAATACGGATCGGATACACAAGTGTGGAACTGACAGGAGTGTTACTATAG
AACTTTGAGTAGTATTTACTTACTACTATNCACCTGTAACTGATTTTCTGATCAAAGTGC
TGTNCTGATAGTAGTAGGATCATCATACTACTTTTAC

consensusID : consensus_6775#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [ATTCGGCACGAGGTCATCAGGCGTTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATACTCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGGTGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTAAAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC]

[+] EMBL CD083166             [ATTCGGCACGAGGTCATCAGGCGTTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATACTCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGGTGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTAAAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATCAGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC]




>consensus_6775#1
ATTCGGCACGAGGTCATCAGGCGTTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAG
GAGCTTCAAAAAACTACCCATACTCATTACATTCACGGCGAAGGTAAACTGCTGAAGGAC
ATAAGAGATAAATACATGTTTGGTGTTTCATTGCTCATTTGGTCATAGACTTAAACAACA
AGATCTAACAGTGAATAAAAAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTG
GACAATGAGGAATTTGTCATAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGT
CCATGGATGGTTTGTGATCCATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCG
GTATTAAAGATCGAACTGGTAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTC
AACTCTTCACAGGTAGTTGTCTAAAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTA
TTTGATATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAG
AATCTGTTTTAGTACTTATGATCAGATAGGATNCATATACANATATGCAGAAGTAGTTTG
TATCAATCCAACTTANCACACC

consensusID : consensus_6775#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [AGCCTTCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA]

[+] EMBL CD137070             [AGCCTTCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGAATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA]




>consensus_6775#2
AGCCTTCATAATAACACATCATTACCCAGACGGAGTAAACAATATATACAGATTCAGCGA
ATCCAAATGATATGCACAAACAACAGATTATTGAGAAATATGGTGAACACTTTGCGATGA
TGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAACTAGTATTCCTTAC
CATGCAAAATACGGTTCGGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6775#0      AAACCCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCA 60
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      ------------------------------------------------------------
                                                                                  

consensus_6775#0      TAAAATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATC 120
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      ------------------------------------------------------------
                                                                                  

consensus_6775#0      CATGCACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGG 180
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      ------------------------------------------------------------
                                                                                  

consensus_6775#0      TAAGCAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGTATTTGA 240
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      ------------------------------------------------------------
                                                                                  

consensus_6775#0      TATATTGCGGCAAAACAGTGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCT 300
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      -------------------------------------ATTCGGCACGAGGTCATCAGGCG 23
                                                                                  

consensus_6775#0      GTTTTAGTACTTATGATCAGATAGGATCATATAACAAATATGCAGAAGTAGTTTGTATCA 360
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      TTTTGGAAGCTGGACTGAATTTTGTGGTGTCTTAAAGGAGCTTCAAAAAACTACCCATAC 83
                                                                                  

consensus_6775#0      ATCCAACTTACAACACCAATAATAGAAGTTGGTAATAAGGGATAATTTTGGACTGGAGCG 420
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      TCATTACATTCACGGCGAAGGTAAACTGCTGAAGGACATAAGAGATAAATACATGTTTGG 143
                                                                                  

consensus_6775#0      TCCTGTTCTGTTAGCATGGACGCAAAAAGAATTTCCAGCAGATGTAACCTGGATCTTGGA 480
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      TGTTTCATTGCTCATTTGGTCATAGACTTAAACAACAAGATCTAACAGTGAATAAAAAAC 203
                                                                                  

consensus_6775#0      TAAGTTCAGAAGGCGAACTCTTAGAGCTCATCATATTCTTAGACAATGCAGGAGGATAAA 540
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      CCTGAAAACTTGCTAATTAAGGTTCCTTGTAAACTTGGACAATGAGGAATTTGTCATAAA 263
                                                                                  

consensus_6775#0      TAACACACATAACTTCCATAATAACAC--ATCATTACCCAGACGGAGTAAACAATATATA 598
consensus_6775#2      ----------AGCCTTCATAATAACAC--ATCATTACCCAGACGGAGTAAACAATATATA 48
consensus_6775#1      ATCATACAAGATGCGTCACAATCATCCTTGTAATAGTCCATGGATGGTTTGTGATCCATG 323
                                *     ** *** *  *   * **   ***      **     **  ** 

consensus_6775#0      CAGATTCAGCGAATCCAAATGATATGCACAAACAACAG-ATTATTGAGAAATATGGTGAA 657
consensus_6775#2      CAGATTCAGCGAATCCAAATGATATGCACAAACAACAG-ATTATTGAGAAATATGGTGAA 107
consensus_6775#1      CACCAGAAGATTGTCCTCAAAAGAAAATTTGAAGCCGGTATTAAAGATCGAACTGGTAAG 383
                      **     **    ***  *  * *       *   * * ****  **   *  **** * 

consensus_6775#0      CACTTTGC-GATGATGGTGTGAAGGAAAGTCNNACACTTT-ACCTA-GGATCATCGATA- 713
consensus_6775#2      CACTTTGC-GATGATGGTGTGAAGGAGAGTCGACAACTTTTACCTAAGGATCATCGATAA 166
consensus_6775#1      CAGGTTACTGCTGCTAATGTGGAGACTATGGAAATTCAACTCTTCACAGGTAGTTGTCTA 443
                      **  ** * * ** *  **** **   *        *        *  * *  * *    

consensus_6775#0      CTAGTATTCCTA--CATA-GAAATACGGATCGGA-TACACAAGTGTGGAACTGACAGGAG 769
consensus_6775#2      CTAGTATTCCTTACCATGCAAAATACGGTTCGGAGTA----------------------- 203
consensus_6775#1      AAAGTATGTTTTAGGTTGTTATAAACGACTGCAAGTATTTGATATATTGCGGCAAAACAG 503
                        *****   *     *   * * ***  *   * **                       

consensus_6775#0      TGTTACTATAGAACTTTGAGTAGTATTTACTTACTACTATNCACCTGTAACTGATTTTCT 829
consensus_6775#2      ------------------------------------------------------------
consensus_6775#1      TGAACTAACAGAGTATTCAGAATACGAATGTCGCCAGAATCTGTTTTAGTACTTATGATC 563
                                                                                  

consensus_6775#0      GATCAAAGTGCTGTNCTGATAGTAGTAGGATCATCATACTACTTTTAC----------- 877
consensus_6775#2      -----------------------------------------------------------
consensus_6775#1      AGATAGGATNCATATACANATATGCAGAAGTAGTTTGTATCAATCCAACTTANCACACC 622