cluster # 6776

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Schistosoma mansoni
cluster # 6776 cluster # 6776 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6776#0 length = 1106 sequences # 2

consensus_6776#1 length = 599 sequences # 2

consensusID : consensus_6776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1106
fasta sequence

                              [TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACAGTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATCCTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTGTTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATATTTTGTTCACCTATTGNATTGTATGTTCGCATGGTCTGTAAATTCCCCCCCCACTGTATACTATTTGTCACTTGATGATATGTAGACTAATGCCATCACAGTACTGATTNTAGCAAGTATCATGGACCGANNTATCATCATATCNANTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNATGGTGACACCTGAAATGAATCTG]

[+] EMBL CD129953             [TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACAGTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATCCTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTGTTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD081852             [                                                                                                                                                                                                        gaggGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATATTTTGTTCACCTATTGNATTGTATGTTCGCATGGTCTGTAAATTCCCCCCCCACTGTATACTATTTGTCACTTGATGATATGTAGACTAATGCCATCACAGTACTGATTNTAGCAAGTATCATGGACCGANNTATCATCATATCNANTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNATGGTGACACCTGAAATGAATCTG]




>consensus_6776#0
TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACA
GTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATC
CTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTG
TTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGG
TTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTT
CTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTT
TGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTA
AAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGG
ATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAG
ACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTA
TGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTG
TCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGAT
CCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGA
AATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGT
TACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATA
TTTTGTTCACCTATTGNATTGTATGTTCGCATGGTCTGTAAATTCCCCCCCCACTGTATA
CTATTTGTCACTTGATGATATGTAGACTAATGCCATCACAGTACTGATTNTAGCAAGTAT
CATGGACCGANNTATCATCATATCNANTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
NNATGGTGACACCTGAAATGAATCTG

consensusID : consensus_6776#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [CNTAACAGCNTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTCATATATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAATTTGTTTCACTAAATACATTTTTTATGAC]

[-] EMBL CD075567             [CNTAACAGCNTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTCATATATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAAT                            ]
[-] EMBL CD077163             [                                                                                                                                                                                                                                                                                                      ATTAACGATGAACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTATTTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTC    ATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAAATTGTTTCACTAAATACATTTTTTATGAC]




>consensus_6776#1
CNTAACAGCNTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAA
TCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTA
CAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGA
TTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTAT
TACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAAC
GATGGACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCC
CCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACA
AGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTCATA
TATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGT
ACAGCCTTGAAAATGAAATCGCTGAAAAAATTTGTTTCACTAAATACATTTTTTATGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6776#0      TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACA 60
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      GTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATC 120
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      CTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTG 180
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      TTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGG 240
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      TTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTT 300
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      CTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTT 360
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      TGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTA 420
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      AAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGG 480
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      ATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAG 540
consensus_6776#1      ------------------------------------------------------------
                                                                                  

consensus_6776#0      ACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTA 600
consensus_6776#1      ------------------------------------------------CNTAACAGCNTA 12
                                                                      * ******* **

consensus_6776#0      TGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTG 660
consensus_6776#1      TGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTG 72
                      ************************************************************

consensus_6776#0      TCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGAT 720
consensus_6776#1      TCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGAT 132
                      ************************************************************

consensus_6776#0      CCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGA 780
consensus_6776#1      CCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGA 192
                      ************************************************************

consensus_6776#0      AATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGT 840
consensus_6776#1      AATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGT 252
                      ************************************************************

consensus_6776#0      TACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATA 900
consensus_6776#1      TACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATA 312
                      ***************************************** ******************

consensus_6776#0      TTTTGTTCACCTATTGNATTGTATGTT-CGCATGGTCTGTAAATTCCCCCCCC-ACTGTA 958
consensus_6776#1      TTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTA 372
                      ********* *   *  ********** ****** ****************** ******

consensus_6776#0      T--ACTATTTGT-CACTTGATGAT-ATGTAGACTAAT-GC-CATCACAGT--ACTGA-TT 1009
consensus_6776#1      ATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATT 432
                         ********* *********** ************ ** *******    ***** **

consensus_6776#0      NTAGCAAG--TATCA--TGGACCG--ANNTATCATCATATCNANTNNNNNNNNNNNNNNN 1063
consensus_6776#1      TTAGCAAAGTTATTCATTGGACCGTAATTTATCATT-CATTAATTCATATATATATATAT 491
                       ******   ***    *******  *  ******   **  * *               

consensus_6776#0      NNNNNNNNNNNNNNNNANN-ATGGTGACACCTGAAATGAATCTG---------------- 1106
consensus_6776#1      ATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAA 551
                                      *   **    * *  *  *    ** **                

consensus_6776#0      ------------------------------------------------
consensus_6776#1      AATGAAATCGCTGAAAAAATTTGTTTCACTAAATACATTTTTTATGAC 599