These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [GAGGTGCGGAACGAAACGGCGGGCTTCTTT-AGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCGCATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAAGTCTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGTGAATGAAACAGAAGTGGCAGTGTTCAGAATGAGCGATTTTCTGGCTCAGCGCGATAATCCAGAATTTCTGTGGTGAGAAGCAGTACTTAAAGTCACTATGAAGCAATCATTTGTAAATATATAAAT] [+] EMBL CD081885 [GAGGTGCGGAACGAAACGGCGGGCTTCTTT AGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCGCATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAAGTCTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGTGAATGAAACAGAAGTGGCAGTGTTCAGAATGAGCGATTTTCTGGCTCAGCGCGATAATCCAGAATTTCTGTGGTGAGAAGCAGTACTTAAAGTCACTATGAAGCAATCATTTGTAAATATATAAAT] [-] EMBL CD075592 [ AACGGCGGGCTTCTTTCAGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTTTTACTTGCCTCTGTCAAACATTTTTCAGTCAGCGACTGTAAAAGACCTGTTCGCCCGCATACATCATGAAGTAAAAACCTTTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCCCTGAAAGTTCGCCCCAAAGCTTTTAACCCAAAGTTTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATTTCTTGGAATAGTGAATGAAACAAAAGTGGCAGTGTTCAGAATGAGCGATTTTTTGGCTCAGCGCGATAATCCAGAATTTTTGTGGTGAGAAGCAGTACTTAAAGTCCCTATGAAGCAATCATTTGTAAATATATAAA ] consensusID : consensus_6777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [TATAGATTAATCGTAAACTTCTACGCTTAAGTCATGGATTGATGTACTTATTATTTATTTGAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAAGGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGTATGAGAGTGAGATGATAATAATGACAACAGGAAAAACAGTTCAGTCAGCAAAACTACAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTACTGCAGGATCGCCACTGGTCTTTATTCTGAACCATATCT] [+] EMBL CD125735 [TATAGATTAATCGTAAACTTCTACGCTTAAGTCATGGATTGATGTACTTATTATTTATTTGAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAAGGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGTATGAGAGTGAGATGATAATAATGACAACAGGAAAAACAGTTCAGTCAGCAAAACTACAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTACTGCAGGATCGCCACTGGTCTTTATTCTGAACCATATCT] consensusID : consensus_6777#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [AGGCGGTCAAGGTTGCGGAACGAAACGGCGGGCTTCTTTCAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAAGTCTGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAATAAACCAACAATAACTGCTACTGGTGTCATTGTTATTGTGTGGCGCATATGTATTTGGTGCTCCCTTGTACTAATGTTAATATGTTCAAATAAATAAATAA] [+] EMBL CD157869 [AGGCGGTCAAGGTTGCGGAACGAAACGGCGGGCTTCTTTCAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAAGTCTGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAATAAACCAACAATAACTGCTACTGGTGTCATTGTTATTGTGTGGCGCATATGTATTTGGTGCTCCCTTGTACTAATGTTAATATGTTCAAATAAATAAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6777#0 GAGGTGCGGAACGAAACGGCGGGCTTCTTTAGTGAGATATATTAGGGGCTTTAACTCATA 60 consensus_6777#2 ------------------------------------------------------------ consensus_6777#1 ------------------------------------------------------------ consensus_6777#0 AATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAAC 120 consensus_6777#2 ------------------------------------------------------------ consensus_6777#1 ------------------------------------------------------------ consensus_6777#0 GTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCG 180 consensus_6777#2 ------------------------------------------------------------ consensus_6777#1 --------------------------------------------------------TATA 4 consensus_6777#0 CATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTA 240 consensus_6777#2 -----------------AGGCGGTCAAGGTTGCGGAACGAAACGGCGGG----CTTCTTT 39 consensus_6777#1 GATTAATCGTAAACTTCTA--CGCTTAAGTCATGGATTGATGTACTTATTA--TTTATTT 60 * ** ** consensus_6777#0 CGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAA-GTCTGGGGAACTGCTAATTG 299 consensus_6777#2 CAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAA-GTCTGGG-AACTGCTAATTG 97 consensus_6777#1 GAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAA 120 * * * * * * *** ** ** * * * * *** consensus_6777#0 ATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTC--TTGGAAT 357 consensus_6777#2 ATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTC--TTGGAAT 155 consensus_6777#1 GGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGT 180 ** * * *** * * *** *** * * **** ** * * consensus_6777#0 AGTG-AATGAAACAGAAGTGGCAGTGTTCAGAA---TGAGCGATTTTCTGGCTC------ 407 consensus_6777#2 AGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAAT 215 consensus_6777#1 ATGAGAGTGAGATGATAATAATGACAACAGGAA----AAACAGTTCAGTCAGCAAAACTA 236 * * * * * * * * consensus_6777#0 AGCGCGATAAT--------CCAGA-------ATTTCTGTGGTGAGAAGCA---GTACTTA 449 consensus_6777#2 AAACCAACAATAACTGCTACTGGTGT----CATTGTTATTGTGTGGCGCATATGTATTTG 271 consensus_6777#1 CAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTA 296 * *** * ** * * * * * * * ** consensus_6777#0 AAGTCACTATGA-AGCAAT-----CATTTGTAAATATATAAAT-- 486 consensus_6777#2 GTGCTCCCTTGT-ACTAATGTTAATATGTTCAAATAAATAAATAA 315 consensus_6777#1 CTGCAGGATCGCCACTGGTCTT--TATTCTGAACCATATCT---- 335 * * * * ** ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||