cluster # 6777

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Schistosoma mansoni
cluster # 6777 cluster # 6777 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6777#0 length = 486 sequences # 2

consensus_6777#1 length = 335 sequences # 1
consensus_6777#2 length = 315 sequences # 1

consensusID : consensus_6777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence

                              [GAGGTGCGGAACGAAACGGCGGGCTTCTTT-AGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCGCATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAAGTCTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGTGAATGAAACAGAAGTGGCAGTGTTCAGAATGAGCGATTTTCTGGCTCAGCGCGATAATCCAGAATTTCTGTGGTGAGAAGCAGTACTTAAAGTCACTATGAAGCAATCATTTGTAAATATATAAAT]

[+] EMBL CD081885             [GAGGTGCGGAACGAAACGGCGGGCTTCTTT AGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCGCATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAAGTCTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGTGAATGAAACAGAAGTGGCAGTGTTCAGAATGAGCGATTTTCTGGCTCAGCGCGATAATCCAGAATTTCTGTGGTGAGAAGCAGTACTTAAAGTCACTATGAAGCAATCATTTGTAAATATATAAAT]
[-] EMBL CD075592             [              AACGGCGGGCTTCTTTCAGTGAGATATATTAGGGGCTTTAACTCATAAATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAACGTTTTACTTGCCTCTGTCAAACATTTTTCAGTCAGCGACTGTAAAAGACCTGTTCGCCCGCATACATCATGAAGTAAAAACCTTTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTACGATGCCCTGAAAGTTCGCCCCAAAGCTTTTAACCCAAAGTTTGGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATTTCTTGGAATAGTGAATGAAACAAAAGTGGCAGTGTTCAGAATGAGCGATTTTTTGGCTCAGCGCGATAATCCAGAATTTTTGTGGTGAGAAGCAGTACTTAAAGTCCCTATGAAGCAATCATTTGTAAATATATAAA ]




>consensus_6777#0
GAGGTGCGGAACGAAACGGCGGGCTTCTTTAGTGAGATATATTAGGGGCTTTAACTCATA
AATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAAC
GTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCG
CATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTA
CGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAAGTCTGGGGAACTGCTAATTGA
TTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGT
GAATGAAACAGAAGTGGCAGTGTTCAGAATGAGCGATTTTCTGGCTCAGCGCGATAATCC
AGAATTTCTGTGGTGAGAAGCAGTACTTAAAGTCACTATGAAGCAATCATTTGTAAATAT
ATAAAT

consensusID : consensus_6777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [TATAGATTAATCGTAAACTTCTACGCTTAAGTCATGGATTGATGTACTTATTATTTATTTGAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAAGGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGTATGAGAGTGAGATGATAATAATGACAACAGGAAAAACAGTTCAGTCAGCAAAACTACAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTACTGCAGGATCGCCACTGGTCTTTATTCTGAACCATATCT]

[+] EMBL CD125735             [TATAGATTAATCGTAAACTTCTACGCTTAAGTCATGGATTGATGTACTTATTATTTATTTGAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAAGGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGTATGAGAGTGAGATGATAATAATGACAACAGGAAAAACAGTTCAGTCAGCAAAACTACAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTACTGCAGGATCGCCACTGGTCTTTATTCTGAACCATATCT]




>consensus_6777#1
TATAGATTAATCGTAAACTTCTACGCTTAAGTCATGGATTGATGTACTTATTATTTATTT
GAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAA
GGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGT
ATGAGAGTGAGATGATAATAATGACAACAGGAAAAACAGTTCAGTCAGCAAAACTACAAC
CAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTACTGC
AGGATCGCCACTGGTCTTTATTCTGAACCATATCT

consensusID : consensus_6777#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [AGGCGGTCAAGGTTGCGGAACGAAACGGCGGGCTTCTTTCAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAAGTCTGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAATAAACCAACAATAACTGCTACTGGTGTCATTGTTATTGTGTGGCGCATATGTATTTGGTGCTCCCTTGTACTAATGTTAATATGTTCAAATAAATAAATAA]

[+] EMBL CD157869             [AGGCGGTCAAGGTTGCGGAACGAAACGGCGGGCTTCTTTCAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAAGTCTGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAATAAACCAACAATAACTGCTACTGGTGTCATTGTTATTGTGTGGCGCATATGTATTTGGTGCTCCCTTGTACTAATGTTAATATGTTCAAATAAATAAATAA]




>consensus_6777#2
AGGCGGTCAAGGTTGCGGAACGAAACGGCGGGCTTCTTTCAATGCACTGAAAGTTCGCCA
CAAAGCTTTTAACGCAAAGTCTGGGAACTGCTAATTGATTTACAAGGTGATCCTATTCCG
AGCAATTCGGACCTAACTTTAGAATCTCTTGGAATAGCATAATACTCTGCTCCTGTTTCT
GTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAATAAACCAACAATAACTGCTACTGGTG
TCATTGTTATTGTGTGGCGCATATGTATTTGGTGCTCCCTTGTACTAATGTTAATATGTT
CAAATAAATAAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6777#0      GAGGTGCGGAACGAAACGGCGGGCTTCTTTAGTGAGATATATTAGGGGCTTTAACTCATA 60
consensus_6777#2      ------------------------------------------------------------
consensus_6777#1      ------------------------------------------------------------
                                                                                  

consensus_6777#0      AATGAGCCAGAGTATAACTGTTCCCGTGACTTTAATACGTTCATTCAAGTACCGTACAAC 120
consensus_6777#2      ------------------------------------------------------------
consensus_6777#1      ------------------------------------------------------------
                                                                                  

consensus_6777#0      GTCTTACTTGCCTCTGTCAAACATTTCTCAGTCAGCGACTGTAAAAGACCTGTTCGACCG 180
consensus_6777#2      ------------------------------------------------------------
consensus_6777#1      --------------------------------------------------------TATA 4
                                                                                  

consensus_6777#0      CATACATCATGAAGTAAAAACCTCTTCCGCTATACCTCCTCCTTTCAAGAACCTTTGTTA 240
consensus_6777#2      -----------------AGGCGGTCAAGGTTGCGGAACGAAACGGCGGG----CTTCTTT 39
consensus_6777#1      GATTAATCGTAAACTTCTA--CGCTTAAGTCATGGATTGATGTACTTATTA--TTTATTT 60
                                                  *                         ** ** 

consensus_6777#0      CGATGCACTGAAAGTTCGCCACAAAGCTTTTAACACAAA-GTCTGGGGAACTGCTAATTG 299
consensus_6777#2      CAATGCACTGAAAGTTCGCCACAAAGCTTTTAACGCAAA-GTCTGGG-AACTGCTAATTG 97
consensus_6777#1      GAACAAAAAACATTTGTACAAGGGAGCACCAAATACATATGCGCCACACAATAACAATAA 120
                        *   *    *  *   * *   ***    **  ** * *        * *   ***  

consensus_6777#0      ATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTC--TTGGAAT 357
consensus_6777#2      ATTTACAAGGTGATCCTATTCCGAGCAATTCGGACCTAACTTTAGAATCTC--TTGGAAT 155
consensus_6777#1      GGTTGTGAAGAGATGTAAGTGCGATTAATGAAAAGAACAACAACGAATGGAAGTTAGTGT 180
                        **   * * ***   * * ***  ***    *    *     ****     ** *  *

consensus_6777#0      AGTG-AATGAAACAGAAGTGGCAGTGTTCAGAA---TGAGCGATTTTCTGGCTC------ 407
consensus_6777#2      AGCATAATACTCTGCTCCTGTTTCTGTTTGGGCGCCCGGGCAGTATTATAGCCCTCAAAT 215
consensus_6777#1      ATGAGAGTGAGATGATAATAATGACAACAGGAA----AAACAGTTCAGTCAGCAAAACTA 236
                      *    * *          *           *         *  *    *           

consensus_6777#0      AGCGCGATAAT--------CCAGA-------ATTTCTGTGGTGAGAAGCA---GTACTTA 449
consensus_6777#2      AAACCAACAATAACTGCTACTGGTGT----CATTGTTATTGTGTGGCGCATATGTATTTG 271
consensus_6777#1      CAACCAGAAATTCTTTTAGCTAAAGAAGTACGTTCATTTCCTATGAAGAAGTAAAAGTTA 296
                          *   ***        *            **  * *  *  *  * *     * ** 

consensus_6777#0      AAGTCACTATGA-AGCAAT-----CATTTGTAAATATATAAAT-- 486
consensus_6777#2      GTGCTCCCTTGT-ACTAATGTTAATATGTTCAAATAAATAAATAA 315
consensus_6777#1      CTGCAGGATCGCCACTGGTCTT--TATTCTGAACCATATCT---- 335
                        *       *  *    *      **    **  * **