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Schistosoma mansoni
cluster # 6779 cluster # 6779       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6779#0 length = 980 sequences # 3  
consensus_6779#1 length = 314 sequences # 1  

consensusID : consensus_6779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 980
fasta sequence
                              [GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC]

[+] EMBL CD075622             [GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCA                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD083937             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC]
[+] EMBL CD193973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTG      ]


>consensus_6779#0 GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAA ACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAAT ATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACAC ATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCT ACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAA ATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGT CAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCA CTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAG TATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTT TCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTG AGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGA AATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGG GCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATG GAGGTGTTGAAGTGATTGGC



consensusID : consensus_6779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence
                              [CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG]

[-] EMBL CD077740             [CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG]


>consensus_6779#1 CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATT CCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCA TTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTG TGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTA GAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCC GAATTCTGGCCGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6779#0      GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAA 60
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      ACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAAT 120
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      ATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACAC 180
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      ATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCT 240
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      ACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAA 300
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      ATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGT 360
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      CAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCA 420
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      CTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAG 480
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      TATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTT 540
consensus_6779#1      -----CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTT 55
                           ** ********************** *****************************

consensus_6779#0      TCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 600
consensus_6779#1      TCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 115
                      ********** *************************************************

consensus_6779#0      TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 660
consensus_6779#1      TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 175
                      ************************************************************

consensus_6779#0      AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 720
consensus_6779#1      AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 235
                      ************************************************************

consensus_6779#0      CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTG 780
consensus_6779#1      CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTC 295
                      ********************************************************  * 

consensus_6779#0      AGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGA 840
consensus_6779#1      -GTGCCGAAT-TCTGGCCGCG--------------------------------------- 314
                       ***       * **    *                                        

consensus_6779#0      AATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGG 900
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      GCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATG 960
consensus_6779#1      ------------------------------------------------------------
                                                                                  

consensus_6779#0      GAGGTGTTGAAGTGATTGGC 980
consensus_6779#1      --------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)