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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence
[GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC]
[+] EMBL CD075622 [GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCA ]
[-] EMBL CD083937 [ GACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC]
[+] EMBL CD193973 [ AACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTG ]
consensusID : consensus_6779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG]
[-] EMBL CD077740 [CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6779#0 GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAA 60
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 ACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAAT 120
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 ATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACAC 180
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 ATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCT 240
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 ACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAA 300
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 ATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGT 360
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 CAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCA 420
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 CTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAG 480
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 TATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTT 540
consensus_6779#1 -----CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTT 55
** ********************** *****************************
consensus_6779#0 TCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 600
consensus_6779#1 TCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 115
********** *************************************************
consensus_6779#0 TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 660
consensus_6779#1 TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 175
************************************************************
consensus_6779#0 AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 720
consensus_6779#1 AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 235
************************************************************
consensus_6779#0 CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTG 780
consensus_6779#1 CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTC 295
******************************************************** *
consensus_6779#0 AGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGA 840
consensus_6779#1 -GTGCCGAAT-TCTGGCCGCG--------------------------------------- 314
*** * ** *
consensus_6779#0 AATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGG 900
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 GCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATG 960
consensus_6779#1 ------------------------------------------------------------
consensus_6779#0 GAGGTGTTGAAGTGATTGGC 980
consensus_6779#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||