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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA]
[+] EMBL CD081960 [GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA]
[-] EMBL CD135108 [ ATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGC ]
consensusID : consensus_6782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence
[GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT]
[-] EMBL CD075640 [GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT]
[+] EMBL CD145387 [ GGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCACAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6782#0 GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTG 60
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCC 120
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACA 180
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 CAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTC 240
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 CAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTT 300
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 CACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATAT 360
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 CAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 420
consensus_6782#1 ------------GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 48
************************************************
consensus_6782#0 ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 480
consensus_6782#1 ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 108
************************************************************
consensus_6782#0 GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 540
consensus_6782#1 GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 168
************************************************************
consensus_6782#0 CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGA-TA 599
consensus_6782#1 CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATA 228
********************************************************* **
consensus_6782#0 TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTT 659
consensus_6782#1 TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTT 288
*********************************************** ************
consensus_6782#0 CTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAA 719
consensus_6782#1 CTTGTGTAGACATTAACGGACCA-ATTTGTGGGATTCGGCGGATATGGGTAGAACATAAA 347
********************* *** ***** * *********** *******
consensus_6782#0 CATCGTCGGAAGGGGATAGCCACAA-TTTATTAGATGCTGTGCTACAAA-CTTAATTTAT 777
consensus_6782#1 CATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTAT 407
************** ****** *** *********************** **********
consensus_6782#0 GGGTTAC-ACTCTCTCGTACACAA-CAGCTTTTTNCGAACCA-CTGCAA-TGGCGCAGAT 833
consensus_6782#1 GGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGAT 467
** **** **************** ********* ******* ****** **********
consensus_6782#0 TTTGCTNGATCT-ACACAG-CCGA-AAGATTCT---ATATACTGGATT-ATACTTT-ATA 885
consensus_6782#1 TTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATA 527
****** **** ****** **** ****** ******** ** ******* ***
consensus_6782#0 TGGAA--CTGA-CACTNA--GGTATT-ATAGTTCTAATTATANAGAATA-------- 928
consensus_6782#1 ATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT 584
*** **** **** * * **** ********** * ** *** **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||