cluster # 6790

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Schistosoma mansoni
cluster # 6790 cluster # 6790 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6790#0 length = 874 sequences # 1
consensus_6790#1 length = 540 sequences # 1

consensus_6790#2 length = 530 sequences # 1
consensus_6790#3 length = 360 sequences # 1

consensusID : consensus_6790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 874
fasta sequence

                              [TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTCGATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGAAATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCATCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGATGCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTATGTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATAGATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTNCGGTGTACATTNCAGTATGCATATAATGGCTTAATTNCTTCAATGGAGCGTTTTTCGATCACGTCTGCTTGGTCTTTATATTTCGAGATGATCAGAATATGGTATTATACGCCGCTTTCGTACCATCGGCTTCGCTATTCTGTCACGTTCGACATTTACTAGATTCGTACACACTATAGAATATCTTATTTATTTATAAATNGNCGACCGTNGATAA]

[+] EMBL CD082171             [TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTCGATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGAAATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCATCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGATGCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTATGTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATAGATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTNCGGTGTACATTNCAGTATGCATATAATGGCTTAATTNCTTCAATGGAGCGTTTTTCGATCACGTCTGCTTGGTCTTTATATTTCGAGATGATCAGAATATGGTATTATACGCCGCTTTCGTACCATCGGCTTCGCTATTCTGTCACGTTCGACATTTACTAGATTCGTACACACTATAGAATATCTTATTTATTTATAAATNGNCGACCGTNGATAA]




>consensus_6790#0
TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTC
GATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGA
AATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCA
TCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGAT
GCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTAT
GTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATA
GATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAAT
TGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGA
ACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGATGAT
GTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCANA
AGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTNCGG
TGTACATTNCAGTATGCATATAATGGCTTAATTNCTTCAATGGAGCGTTTTTCGATCACG
TCTGCTTGGTCTTTATATTTCGAGATGATCAGAATATGGTATTATACGCCGCTTTCGTAC
CATCGGCTTCGCTATTCTGTCACGTTCGACATTTACTAGATTCGTACACACTATAGAATA
TCTTATTTATTTATAAATNGNCGACCGTNGATAA

consensusID : consensus_6790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCAAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGTGCTCCCTCGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTTTCGATCACAGTCTGCTTGGTCTTTTATATTTCGAGGATGATCAGAAATATGGTATTTATACGCCGCTTTTCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATCGAACATTTAAACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTGTTCGTACCGGTAGAAATAAAGTATG]

[-] EMBL CD075787             [TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCAAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGTGCTCCCTCGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTTTCGATCACAGTCTGCTTGGTCTTTTATATTTCGAGGATGATCAGAAATATGGTATTTATACGCCGCTTTTCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATCGAACATTTAAACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTGTTCGTACCGGTAGAAATAAAGTATG]




>consensus_6790#1
TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTG
TGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTA
ATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTA
TATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCAAAAGACCTGATGAAACA
AACGATTCAGCATCGTCACATAACGAGATTATGTGCTCCCTCGGTGTTACATTCCAGTAT
GCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTTTCGATCACAGTCTGCTTGGTCTT
TTATATTTCGAGGATGATCAGAAATATGGTATTTATACGCCGCTTTTCGTACCAATCGGC
TTCGCCTTATTCCTGTCAACGTATCGAACATTTAAACTAGTATTCCGTAACAACAACTAA
TAGGAAATATCTTTATTTTAATTTTATAATATTTGTTCGTACCGGTAGAAATAAAGTATG

consensusID : consensus_6790#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAACAAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTTTAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTATAAATACCATATTTCTGATCATCCTACAAAAAAAATAAATCGTGTAATTATTAAGCGAACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAATCAAAATGAAAGTACTCTATGAACTCTACTTTAACGTTTACGCAACGCTCAGTAGATCTGAATGTGATTTTTGTTCTGCCGTACGGTTGACGACGTCCAAGATTCTCAATCAAATGTTGAATCGTAAGGAATGGCTACATAACCAAATTGCACTGATCCCCAAATGCCCTGGTACGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTTCATATGACCATGCCTACTT]

[+] EMBL AI394757             [TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAACAAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTTTAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTATAAATACCATATTTCTGATCATCCTACAAAAAAAATAAATCGTGTAATTATTAAGCGAACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAATCAAAATGAAAGTACTCTATGAACTCTACTTTAACGTTTACGCAACGCTCAGTAGATCTGAATGTGATTTTTGTTCTGCCGTACGGTTGACGACGTCCAAGATTCTCAATCAAATGTTGAATCGTAAGGAATGGCTACATAACCAAATTGCACTGATCCCCAAATGCCCTGGTACGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTTCATATGACCATGCCTACTT]




>consensus_6790#2
TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAACAAATATTAT
AAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTTTAAATGTTC
GATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTATAAATACCAT
ATTTCTGATCATCCTACAAAAAAAATAAATCGTGTAATTATTAAGCGAACAGGTAAGTTA
GTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAATCAAAATGAAAGTA
CTCTATGAACTCTACTTTAACGTTTACGCAACGCTCAGTAGATCTGAATGTGATTTTTGT
TCTGCCGTACGGTTGACGACGTCCAAGATTCTCAATCAAATGTTGAATCGTAAGGAATGG
CTACATAACCAAATTGCACTGATCCCCAAATGCCCTGGTACGGTCGAAAGTGGGGGGGGG
GGGCTTGGCTCTTTCCTTCCTGAGATGCCTTCATATGACCATGCCTACTT

consensusID : consensus_6790#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTCAANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCTCGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTCCCGANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACGCCCGCTNTTCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAACACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTGNCCGNCCCCCGCAGAANT]

[+] EMBL SM304                [ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTCAANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCTCGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTCCCGANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACGCCCGCTNTTCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAACACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTGNCCGNCCCCCGCAGAANT]




>consensus_6790#3
ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTCAANAGACCTGATGAAA
CAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCTCGGNGTTACATTCCAG
TATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTCCCGANCACAGNCTGCTTGGT
CTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACGCCCGCTNTTCGTACCAA
TCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAACACTAGTATTCCGTAACAA
CAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTGNCCGNCCCCCGCAGAANT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6790#0      TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTC 60
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      GATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGA 120
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      AATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCA 180
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      TCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGAT 240
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      GCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTAT 300
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      GTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATA 360
consensus_6790#1      ------------------------------------------------------------
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ------------------------------------------------------------
                                                                                  

consensus_6790#0      GATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAAT 420
consensus_6790#1      ---------------TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAAT 45
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      ---------TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAAC 51
                                                                                  

consensus_6790#0      TGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAA--- 477
consensus_6790#1      TGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAA--- 102
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      AAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTT 111
                                                                                  

consensus_6790#0      CGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGAT 537
consensus_6790#1      CGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGAT 162
consensus_6790#3      ------------------------------------------------------------
consensus_6790#2      TAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTAT 171
                                                                                  

consensus_6790#0      GATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTC 597
consensus_6790#1      GATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTC 222
consensus_6790#3      ----------------ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTC 44
consensus_6790#2      AAATACCATATTTCTGATCATCCTACAAAAA-AAATAAATCGT--GTAATTATTAAGCG- 227
                                         * * * **      * *   ****  *   **  *** *  

consensus_6790#0      ANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTN 657
consensus_6790#1      AAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGT-GCTCCCT 281
consensus_6790#3      AANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCT 104
consensus_6790#2      AACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAAT 287
                      *  **    * *    ** ** *      ***  ** * *       * *          

consensus_6790#0      CGGTGT-ACATTNCAGTATGCATATAATGGCTTAATTNCTTCAA-TGGAGCGTTTT-TCG 714
consensus_6790#1      CGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTT-TCG 340
consensus_6790#3      CGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTC-CCG 163
consensus_6790#2      CAAAATGAAAGTACTCTATGAACTC--TACTTTAACGTTTAC----GCAACGCTCAGTAG 341
                      *    * * * * *  **** *     *   * *     * *    * * ** *     *

consensus_6790#0      ATCAC-GTCTGCTTGGTCTTT--ATATTTCGAG-ATGATCAGAA-TATGGTATT-ATACG 768
consensus_6790#1      ATCACAGTCTGCTTGGTCTTTT-ATATTTCGAGGATGATCAGAAATATGGTATTTATACG 399
consensus_6790#3      ANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACG 223
consensus_6790#2      ATCTGAATGTGATTTTTGTTC---TGCCGTACGGTTGACGACGTCCAAGATTCTCAATCA 398
                      * *      ** **  * **    *       *  ***  *     * * *  * *  * 

consensus_6790#0      CC-GCTTT--CGTACCA-TCGGCTTCGC--TATTC-TGTCA---CGTT-CGACATTTA-- 815
consensus_6790#1      CC-GCTTT-TCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATC-GAACATTTAA- 455
consensus_6790#3      CCCGCTNT-TCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAAC 282
consensus_6790#2      AATGTTGAATCGTAAGGAATGGCTACAT--AACCAAATTGCACTGATCCCCAAATGCC-- 454
                         * *    ****      ** * *     *      *       *    * **     

consensus_6790#0      -CTAGA--TTCGTACACAC------TATAGAATATCTT-ATTT--ATTTATAAATNGNCG 863
consensus_6790#1      ACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTG 515
consensus_6790#3      ACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTG 342
consensus_6790#2      -CTGGTA--CGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTT 511
                       ** *      **    *                *     * *   *       *     

consensus_6790#0      ACCGT-N---GATAA------------ 874
consensus_6790#1      TTCGT-ACC-GGTAGAAATAAAGTATG 540
consensus_6790#3      NCCGN-CCCCCGCAGAANT-------- 360
consensus_6790#2      CATATGACCATGCCTACTT-------- 530