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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACTCTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCAGCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAATCACTTTTCTTCATATTTCTTTTGATAATTGGATTTTTTGGTACCGGGAATATTGCTAGTATAAACAGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAATATTAAATCCTGCCCTGATGGCCATTCTTTTGTTAATTAAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTATAACTGATTGAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATGT]
[+] EMBL CD079175 [GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACTCTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCAGCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAATCACTTTTCTTCATATTTCTTTTGATAATTGGATTTTTTGGTACCGGGAATATTGCTAGTATAAACAGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAATATTAAATCCTGCCCTGATGGCCATTCTTTTGTTAATTAAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTATAACTGATTGAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATGT]
consensusID : consensus_6795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[ACATGTTTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATTTCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAATGACTAATACTAGTCCCTATATCCAACCAACTACCTTCGTTTTTCAACCAAACAAAAAAGGGGATAGCTTTTAGGTTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAGGATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACAAGTAATTGGCTGGATTGCCATTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTTAATTAACAAAAGAATGGCCATCAGGGCAGGATTTAAT]
[+] EMBL CD075961 [ACATGTTTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATTTCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAATGACTAATACTAGTCCCTATATCCAACCAACTACCTTCGTTTTTCAACCAAACAAAAAAGGGGATAGCTTTTAGGTTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAGGATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACAAGTAATTGGCTGGATTGCCATTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTTAATTAACAAAAGAATGGCCATCAGGGCAGGATTTAAT]
consensusID : consensus_6795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence
[GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCTTCTAAAACGTATTAAGGTTCAATTACATTTGAATTATTCTTTATGATATCTATTCCTAATTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTATAACTGATTGANGTGTTACNG]
[+] EMBL CD165250 [GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCTTCTAAAACGTATTAAGGTTCAATTACATTTGAATTATTCTTTATGATATCTATTCCTAATTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTATAACTGATTGANGTGTTACNG]
consensusID : consensus_6795#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[CTATATCCAACCAACTACCTTCGTCTTTCAACCAAACAAAGAAGTGGATAGCTATTAGGTTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAATGATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACGAGTAATTGTCTGGATTGCCACTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTAGATGAGGGAAAATTAAATTTTATCATACTGATTATGACATTTTAAATACCAAAGTGAAACAAAATAGCAATCCATATTTAGTATACCACTAAGATCGTTTGGTGACTTAATTGGACTCACATGNTGTTTTGTAAGTATTATCT]
[+] EMBL CD165230 [CTATATCCAACCAACTACCTTCGTCTTTCAACCAAACAAAGAAGTGGATAGCTATTAGGTTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAATGATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACGAGTAATTGTCTGGATTGCCACTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTAGATGAGGGAAAATTAAATTTTATCATACTGATTATGACATTTTAAATACCAAAGTGAAACAAAATAGCAATCCATATTTAGTATACCACTAAGATCGTTTGGTGACTTAATTGGACTCACATGNTGTTTTGTAAGTATTATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6795#1 ------------------------------------------------------ACATGT 6
consensus_6795#3 ------------------------------------------------------------
consensus_6795#0 GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACT 60
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 TTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATT 66
consensus_6795#3 ------------------------------------------------------------
consensus_6795#0 CTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCA 120
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 TCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAA 126
consensus_6795#3 ------------------------------------------------------------
consensus_6795#0 GCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAA 180
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 TGACTAATACTAGTCCCTATATCCAACC-AACTACCTTCGTTTTTCAACCAAACAAAAAA 185
consensus_6795#3 ----------------CTATATCCAACC-AACTACCTTCGTCTTTCAACCAAACAAAGAA 43
consensus_6795#0 TCACTTTTCTTCATATTTCTTTTGAT---AATTGGATTTTTTG---GTACCGGGAATATT 234
consensus_6795#2 -----GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCT 55
* * * * * * * **
consensus_6795#1 GGGGATAGCTTTTAGG-TTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAG 244
consensus_6795#3 GTGGATAGCTATTAGG-TTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAAT 102
consensus_6795#0 GCTAGTATAAAC-AGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAA----TATTAA 289
consensus_6795#2 TCTAAAACGTATTAAGGTTCAATTACATTTGAATTATT-CTTTATGATATCTATTCCTAA 114
* * ** * * * * * * *
consensus_6795#1 GATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACA-AGTAATTGGCTGGATTGCCA 303
consensus_6795#3 GATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACG-AGTAATTGTCTGGATTGCCA 161
consensus_6795#0 ATCCTGCCCTGATGGCCATTCTTTTGTTAATTA-------AGTAAGTACTGGAAAATCTA 342
consensus_6795#2 TTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTA 174
* ** * * * * ** ***** * * * * *
consensus_6795#1 TTATGTAACTG-----GATAGCTGCATAGATCACACCCAAAAAGAGCATAG-GACACATT 357
consensus_6795#3 CTATGTAACTG-----GATAGCTGCATAGATCACACCCAAAAAGAGCATAG-GACACATT 215
consensus_6795#0 CTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTT 402
consensus_6795#2 CTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTT 234
* * * * *** *** * * *** * * *** **
consensus_6795#1 ACCTTAATTAACAAAAG--AATGGCCATCAGGGCAGGATTTAAT---------------- 399
consensus_6795#3 ACCTAGATGAGGGAAAATTAAATTTTATCATA-CTGATTATGACATTTTAAATACCAAAG 274
consensus_6795#0 GTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCA 462
consensus_6795#2 GTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCA 294
* ** ** * *
consensus_6795#1 ------------------------------------------------------------
consensus_6795#3 TGAAACAAAATAGCAATCCAT--ATTTAGTATACCACTAAGATCGTTTGGTGACTTAATT 332
consensus_6795#0 CATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTA--TAACTGATT 520
consensus_6795#2 CATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTA--TAACTGATT 352
consensus_6795#1 ------------------------------------------------------------
consensus_6795#3 GGACTCACATGNTGTTTTGTAAGTATTATCT----------------------------- 363
consensus_6795#0 GAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATG 580
consensus_6795#2 GANGTGTTACNG------------------------------------------------ 364
consensus_6795#1 -
consensus_6795#3 -
consensus_6795#0 T 581
consensus_6795#2 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||