cluster # 6796

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Schistosoma mansoni
cluster # 6796 cluster # 6796 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6796#0 length = 684 sequences # 2

consensus_6796#1 length = 317 sequences # 2

consensusID : consensus_6796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCTTTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTGCTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAAATGTTCCTGAATAAATTT]

[+] EMBL CD082366             [GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCTTTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTGCTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAAATGTTCCTGAATAAATT ]
[-] EMBL CD075969             [                                                                                                                                                               ATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCCCCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAATTGTTCCTGAATAAATTT]




>consensus_6796#0
GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCT
TTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTG
CTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCA
GAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGA
GTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAAC
GAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGA
GGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATAT
TTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGT
CAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTC
TAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATTA
TCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTA
ACGAAAATGTTCCTGAATAAATTT

consensusID : consensus_6796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 317
fasta sequence

                              [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA]

[-] EMBL AI395841             [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA]
[-] EMBL AI395519             [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTATAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAAT GGAATTTAGTTTAATTAAAAAAAA         ]




>consensus_6796#1
AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACA
GGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACC
GAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACA
GTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAA
AAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAAT
AAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6796#0      GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCT 60
consensus_6796#1      ------------------------------------------------------------
                                                                                  

consensus_6796#0      TTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTG 120
consensus_6796#1      ------------------------------------------------------------
                                                                                  

consensus_6796#0      CTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCA 180
consensus_6796#1      ------------------------------------------------------------
                                                                                  

consensus_6796#0      GAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGA 240
consensus_6796#1      ------------------------------------------------------------
                                                                                  

consensus_6796#0      GTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAAC 300
consensus_6796#1      ------------------------------------------------------------
                                                                                  

consensus_6796#0      GAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGA 360
consensus_6796#1      ------------------------AACGGCGGGAGGCTTTG------AAGGGCTCT---- 26
                                               * ** **     ****      ***  *  *    

consensus_6796#0      GGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATAT 420
consensus_6796#1      -GACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTG---TTACACTGAATACGT 82
                       **  ***** *         *  * *  **  **  ****    * *  *    **  *

consensus_6796#0      TTGTT-TATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCG 479
consensus_6796#1      GCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCG 142
                          *   *   ************************************************

consensus_6796#0      TCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTT 539
consensus_6796#1      TCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTT 202
                      ************************************************************

consensus_6796#0      CTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATT 599
consensus_6796#1      CTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATT 262
                      ************************* **********************************

consensus_6796#0      ATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATT 659
consensus_6796#1      ATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA----- 317
                      ***************************************   *    * *          

consensus_6796#0      AACGAAAATGTTCCTGAATAAATTT 684
consensus_6796#1      -------------------------