These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCTTTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTGCTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAAATGTTCCTGAATAAATTT] [+] EMBL CD082366 [GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCTTTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTGCTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAAATGTTCCTGAATAAATT ] [-] EMBL CD075969 [ ATAATCAACTTAGTAGGATCAGAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGAGTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAACGAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGAGGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATATTTGTTTATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCCCCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATTAACGAAATTGTTCCTGAATAAATTT] consensusID : consensus_6796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA] [-] EMBL AI395841 [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTCTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA] [-] EMBL AI395519 [AACGGCGGGAGGCTTTGAAGGGCTCTGACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTGTTACACTGAATACGTGCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCGTCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTTATAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATTATCAATGTGAAAGTTGTAAAT GGAATTTAGTTTAATTAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6796#0 GGNAATCATTAGGACAAACCATATTCCTANACAATAACATAAGATCCTTGACTAGGGGCT 60 consensus_6796#1 ------------------------------------------------------------ consensus_6796#0 TTTGTCTCACAACGATTCTGAGTGTCATTTACTTCTGGACTGCCATGTGACTCTATACTG 120 consensus_6796#1 ------------------------------------------------------------ consensus_6796#0 CTTTTCGAAATCGTGGATAAAGATAAATGATCATTAGAAATAATCAACTTAGTAGGATCA 180 consensus_6796#1 ------------------------------------------------------------ consensus_6796#0 GAATTAAAAAATCCAGCATTAATTGCAGAGAAATAAAAAGTAGTATTACAAACTGACTGA 240 consensus_6796#1 ------------------------------------------------------------ consensus_6796#0 GTGAGTCCAATCTTACCACATTTGAAGAATTTAGTATTACGAAATACACGTGAATTAAAC 300 consensus_6796#1 ------------------------------------------------------------ consensus_6796#0 GAGTGAAACTGCTTCCAGGTTTTTCATGGTGGTCCTTTTTGTAATATAAGAACAGTAAGA 360 consensus_6796#1 ------------------------AACGGCGGGAGGCTTTG------AAGGGCTCT---- 26 * ** ** **** *** * * consensus_6796#0 GGAACTTTTTGAAATGTTGTTTGCTGATAATACCATACTGTTAACTAAAGCCAGTTATAT 420 consensus_6796#1 -GACTTTTTTTATCCTGCCCCTATTCACCATGACAGGCTGTG---TTACACTGAATACGT 82 ** ***** * * * * ** ** **** * * * ** * consensus_6796#0 TTGTT-TATTTAGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCG 479 consensus_6796#1 GCACTACGTACTGAATGGAACAGGAGTGAACCCTCACCGAACTTGCGAACTATTTCCTCG 142 * * ************************************************ consensus_6796#0 TCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTT 539 consensus_6796#1 TCAAAATAATGTGACTATGGAAGTATTTACGGAAAACAGTATTAATCACCGCCAAAGTTT 202 ************************************************************ consensus_6796#0 CTAAAAAACAGGCGGAACCTCCACTNTAGTTTCAGAAAAAATAGACTACAGATTTGCATT 599 consensus_6796#1 CTAAAAAACAGGCGGAACCTCCACTTTAGTTTCAGAAAAAATAGACTACAGATTTGCATT 262 ************************* ********************************** consensus_6796#0 ATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATACTTATCTGATATTCTTTTATT 659 consensus_6796#1 ATCAATGTGAAAGTTGTAAATGGGAATCTAGTGTAAATAAAAAAAAAAAAAAAAA----- 317 *************************************** * * * consensus_6796#0 AACGAAAATGTTCCTGAATAAATTT 684 consensus_6796#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||