cluster # 6797

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Schistosoma mansoni
cluster # 6797 cluster # 6797 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6797#0 length = 886 sequences # 3

consensus_6797#1 length = 623 sequences # 1

consensusID : consensus_6797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 886
fasta sequence

                              [CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAGTTCTCCTGTTGCCGAACATAAACACAACCATGAGCCTTATTCAGACAAAGATGAAATAAACGACCGCAATGTTCTTCCAGAACCTGCCGAAGGTCTAGGTCTGAAAGCTCAAAATCGGTACCTGAAAGCAAAAGTCCGCGTACTATTAGAAGAAAATCAAAAGCTCAATTCACAGATTACTCATCAAAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA]

[+] EMBL CD082389             [CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAGTTCTCCTGTTGCCGAACATAAACACAACCATGAGCCTTATTCAGACAAAGATGAAATAAACGACCGCAATGTTCTTCCAGAACCTGCCGAAGGTCTAGGTCTGAAAGCTCAAAATCGGTACCTGAAAGCAAAAGTCCGCGTACTATTAGAAGAAAATCAAAAGCTCAATTCACAGATTACTCATCAAAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGANAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCANATGANATTGATCGATATATTGCGTAGACA                                                                                                                                                                                                                          ]
[-] EMBL CD075990             [                                                                                                                                                                                                                                                                                                                           TCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA]
[-] EMBL CD076853             [                                                                                                                                                                                                                                                                                                                             TCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCTTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA]




>consensus_6797#0
CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAGTTCTCCTGTTGCCGAACAT
AAACACAACCATGAGCCTTATTCAGACAAAGATGAAATAAACGACCGCAATGTTCTTCCA
GAACCTGCCGAAGGTCTAGGTCTGAAAGCTCAAAATCGGTACCTGAAAGCAAAAGTCCGC
GTACTATTAGAAGAAAATCAAAAGCTCAATTCACAGATTACTCATCAAAATGGTGAAATT
GTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTC
ACATCTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTT
CACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAA
CGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCA
ATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAG
AGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAA
AAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTG
CGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTT
CTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAAT
CGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTA
TTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA

consensusID : consensus_6797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGCAAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCTTGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCAGAGTATTGATGAATGCTCATATATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTATGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACGGAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAAT]

[+] EMBL CD083282             [AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGCAAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCTTGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCAGAGTATTGATGAATGCTCATATATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTATGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACGGAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAAT]




>consensus_6797#1
AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGC
AAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCT
TGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCA
GAGTATTGATGAATGCTCATATATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTAT
GACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACGG
AATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAAT
GAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTGC
ACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAA
TGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTC
TGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGA
ATCTGATCGTTATAAAGCTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6797#0      ------------------------------------------------------------
consensus_6797#1      AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGC 60
                                                                                  

consensus_6797#0      -------------------CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAG 41
consensus_6797#1      AAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCT 120
                                         * * **   **  **** *    *  *  ***** * *   

consensus_6797#0      TTCTCCTGTTGCCGAACAT--------AAACACAACCATGAGCCTTATTCAGA-----CA 88
consensus_6797#1      TGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCA 180
                      *    *     *  *  **        ** * **   *  *  ***  ****      **

consensus_6797#0      AAGATGAAATAAACGACCGCAATGTTCTTCCAGAACC---TGCCGAAGGTCTAGGTCTGA 145
consensus_6797#1      GAGTATTGATGAATGCTCATA-TATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTA 239
                       **     ** ** *  *  * * * *  *** * *    * *  ** **    ***  *

consensus_6797#0      AAGCTCAAAATCGGTACCTG--AAAGCAAAAGTCCGCGTACTATTAGAA----GAAAATC 199
consensus_6797#1      TGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACG 299
                         *  ****  *  ** *     **  ***  * * * *  ***   *    *****  

consensus_6797#0      AAA--AGCTCA---ATTCACAGAT-------TACTCATCAAAATGGTGAAATTGTTCGAA 247
consensus_6797#1      GAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAA 359
                       **  ** **     ** **  *         *  *** * *******************

consensus_6797#0      TGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTG 307
consensus_6797#1      TGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTG 419
                      ********************************************************* **

consensus_6797#0      CACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTA 367
consensus_6797#1      CACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTA 479
                      ************************************************************

consensus_6797#0      ATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATT 427
consensus_6797#1      ATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATT 539
                      ************************************************************

consensus_6797#0      CTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAG 487
consensus_6797#1      CTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAG 599
                      ************************************************************

consensus_6797#0      AATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTG 547
consensus_6797#1      AATCTGATCGTTATAAAGCTGAAT------------------------------------ 623
                      ************************                                    

consensus_6797#0      GATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGA 607
consensus_6797#1      ------------------------------------------------------------
                                                                                  

consensus_6797#0      AGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGAC 667
consensus_6797#1      ------------------------------------------------------------
                                                                                  

consensus_6797#0      AAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGG 727
consensus_6797#1      ------------------------------------------------------------
                                                                                  

consensus_6797#0      CTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGA 787
consensus_6797#1      ------------------------------------------------------------
                                                                                  

consensus_6797#0      ATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTT 847
consensus_6797#1      ------------------------------------------------------------
                                                                                  

consensus_6797#0      TTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA 886
consensus_6797#1      ---------------------------------------