These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 886 fasta sequence [CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAGTTCTCCTGTTGCCGAACATAAACACAACCATGAGCCTTATTCAGACAAAGATGAAATAAACGACCGCAATGTTCTTCCAGAACCTGCCGAAGGTCTAGGTCTGAAAGCTCAAAATCGGTACCTGAAAGCAAAAGTCCGCGTACTATTAGAAGAAAATCAAAAGCTCAATTCACAGATTACTCATCAAAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA] [+] EMBL CD082389 [CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAGTTCTCCTGTTGCCGAACATAAACACAACCATGAGCCTTATTCAGACAAAGATGAAATAAACGACCGCAATGTTCTTCCAGAACCTGCCGAAGGTCTAGGTCTGAAAGCTCAAAATCGGTACCTGAAAGCAAAAGTCCGCGTACTATTAGAAGAAAATCAAAAGCTCAATTCACAGATTACTCATCAAAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGANAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCANATGANATTGATCGATATATTGCGTAGACA ] [-] EMBL CD075990 [ TCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA] [-] EMBL CD076853 [ TCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTGGATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGAAGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGACAAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGGCTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGAATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCTTTATTTATTTATTTTTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA] consensusID : consensus_6797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGCAAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCTTGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCAGAGTATTGATGAATGCTCATATATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTATGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACGGAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAAT] [+] EMBL CD083282 [AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGCAAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCTTGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCAGAGTATTGATGAATGCTCATATATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTATGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACGGAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAATGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTGCACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTAATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATTCTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAGAATCTGATCGTTATAAAGCTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6797#0 ------------------------------------------------------------ consensus_6797#1 AANATTTCGGTACGAGGCGACCCCGCTGTTCATGAACTCCTTGGCTCGTGAGGCGTTGGC 60 consensus_6797#0 -------------------CACAATCCTGAGCATAATTGTGAAGTTGAAAACTTTATAAG 41 consensus_6797#1 AAATCCTGTGAATGGATGTCTCGATAAAGAATATAAGTACAGACATATAAACTCTTTGCT 120 * * ** ** **** * * * ***** * * consensus_6797#0 TTCTCCTGTTGCCGAACAT--------AAACACAACCATGAGCCTTATTCAGA-----CA 88 consensus_6797#1 TGAGGCCAAAACAAATGATCTTCTGAGAAGCGCAGGAAAAATACTTGCTCAGGAAGCCCA 180 * * * * ** ** * ** * * *** **** ** consensus_6797#0 AAGATGAAATAAACGACCGCAATGTTCTTCCAGAACC---TGCCGAAGGTCTAGGTCTGA 145 consensus_6797#1 GAGTATTGATGAATGCTCATA-TATCCAGCCAAATCAAAGTCCAAAATGTTACAGTCCTA 239 ** ** ** * * * * * * *** * * * * ** ** *** * consensus_6797#0 AAGCTCAAAATCGGTACCTG--AAAGCAAAAGTCCGCGTACTATTAGAA----GAAAATC 199 consensus_6797#1 TGACAGAAAAGAGCGACTTTCTGGAGAGAAATCCTGAGCATAATTGTGAAGTTGAAAACG 299 * **** * ** * ** *** * * * * *** * ***** consensus_6797#0 AAA--AGCTCA---ATTCACAGAT-------TACTCATCAAAATGGTGAAATTGTTCGAA 247 consensus_6797#1 GAATAAGTTCTCCTGTTGACGAACATAAACACAACCATGAGAATGGTGAAATTGTTCGAA 359 ** ** ** ** ** * * *** * ******************* consensus_6797#0 TGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATCTG 307 consensus_6797#1 TGAAAAGTCGTATGCAAGAACTGGAAGAAGAACGCAATCGGTTACATCGAGTCACATTTG 419 ********************************************************* ** consensus_6797#0 CACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTA 367 consensus_6797#1 CACATTCATCTCAGTTAGAAAAAATGAAAAAAAGTTTGGGCGAAACACGCGTTCACTGTA 479 ************************************************************ consensus_6797#0 ATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATT 427 consensus_6797#1 ATGAACTAGAAACAGAAAAGACTAATTACAAAAAGGATTATGATTCACTGAAACGTAATT 539 ************************************************************ consensus_6797#0 CTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAG 487 consensus_6797#1 CTGATCAGCAAGTTTTCGAGATCAAATCTTTGACTACACGTCTTAATCGTGCAATTGAAG 599 ************************************************************ consensus_6797#0 AATCTGATCGTTATAAAGCTGAATTAGACAAGGTCCGTTCATCTACACGTGAGAGCGTTG 547 consensus_6797#1 AATCTGATCGTTATAAAGCTGAAT------------------------------------ 623 ************************ consensus_6797#0 GATCTATGCGTCATAATATGGATAATTTAATGGCTGAAAATAAGCGGTTGGAAAAGCAGA 607 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 AGTCCGAATTAATTTCAACATTTAAAAAGCAAATGAAATTGATCGATATATTGCGTAGAC 667 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 AAAAAATGCTAATCGAAGCCTCGAAGTGCTTACAAATAACAGAAGATGAATTTCTGAAGG 727 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 CTCTCGATTGGTAAAGTCTTTAAACACAAGCATTTTCCTCGTAATATATTAATCGTCTGA 787 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 ATAAAAACATTTCATATTATCAATGATTGTTTACGTTCTACATGCCTTATTTATTTATTT 847 consensus_6797#1 ------------------------------------------------------------ consensus_6797#0 TTCACAGTTGTATTGTTTTTATATTAGATAAAATATATA 886 consensus_6797#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||