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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1277 fasta sequence
[CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT]
[+] EMBL CD081212 [CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT]
consensusID : consensus_6798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence
[GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA--TTGTC-TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA]
[-] EMBL CD075992 [GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA TTGTC TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA]
[-] EMBL CD162543 [ TCCAAACGAAAGANNNTGTCTTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGT ]
consensusID : consensus_6798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT]
[+] EMBL SMAA69071 [GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANT 60
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 ACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATA 120
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTC 180
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACT 240
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 GACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTT 300
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 AAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGA 360
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTC 420
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGT 480
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTAC 540
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGT 600
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 ATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGAT 660
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTA 720
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTC 780
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATAT 840
consensus_6798#1 ----------GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 50
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 TGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 900
consensus_6798#1 CATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATG 110
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATG 960
consensus_6798#1 TTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATT 170
consensus_6798#2 --------GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATT 52
consensus_6798#0 TTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTT 1020
*********** * *********************** ** ***** **
consensus_6798#1 CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 230
consensus_6798#2 CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 112
consensus_6798#0 CTACTC--AACGAAAGAATGTCT-CTGTGATATTTTTGGGGTTTTGCTA--CAACAT-TG 1074
****** ********* ***** *************** ******* ****** **
consensus_6798#1 TCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 290
consensus_6798#2 TCA-GAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 171
consensus_6798#0 TCATGAAGTCA--TCCATTAAAAGACAAA--TTACATTTGCA-GTAT----ATGACGCAT 1125
*** ******* * ************* * ********* **** * * **
consensus_6798#1 ATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCAT 350
consensus_6798#2 ATGTATCTTAAAGATCTTAAAGATC------TATTT------------------------ 201
consensus_6798#0 ATTGATCT--AAGATCT-ATTTTACAGA----ATTGCATAG--TTTTTCCGC---TCCAT 1173
** **** ******* * * ***
consensus_6798#1 TGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAA 410
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 ---GAAAGACCTC---GTTAC-ATTAT-----TATTGGACAAT---GGACACATT----A 1214
consensus_6798#1 GAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATT 470
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 AAGTTATGTGAT------ACGT---CCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCT 1265
consensus_6798#1 TTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA 510
consensus_6798#2 ----------------------------------------
consensus_6798#0 CCTTTAAAATTT---------------------------- 1277
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||