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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1184 fasta sequence
[CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT]
[+] EMBL CD080226 [CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATA ]
[-] EMBL CD076236 [ ACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT]
consensusID : consensus_6806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT]
[+] EMBL CD082638 [GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT]
consensusID : consensus_6806#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA]
[-] EMBL CD147267 [GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6806#0 CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTT 60
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 GGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAA 120
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 GATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTT 180
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 GAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACT 240
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 TCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAAC 300
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 GATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAG 360
consensus_6806#2 -----------------------------------------------GATCGGATTTAAG 13
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 419
consensus_6806#2 ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 72
consensus_6806#1 ----------------------------------GGTCCTACGGGGATCCATAACTCACC 26
********** **************
consensus_6806#0 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 479
consensus_6806#2 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAG----------- 121
consensus_6806#1 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 86
*************************************************
consensus_6806#0 CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 539
consensus_6806#2 ---------------------------AAGAAGTTTCCTACAGACACAATTCCGAACCGT 154
consensus_6806#1 CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 146
*********************************
consensus_6806#0 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAA----------- 588
consensus_6806#2 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 214
consensus_6806#1 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 206
*************************************************
consensus_6806#0 ------------------------------------------------TATGCAAAATAA 600
consensus_6806#2 GGCTTG------------------------------------------TATGCAAAATAA 232
consensus_6806#1 GGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAA 266
************
consensus_6806#0 GCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAG 660
consensus_6806#2 GCAGTTGATGCCGTCTACTGAACAGGGGAAA----------------------------- 263
consensus_6806#1 GCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAG 326
******************************
consensus_6806#0 GATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAAC 720
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 GATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAAC 386
consensus_6806#0 ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 780
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 446
consensus_6806#0 CAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGG-CG 839
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 CAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCG 506
consensus_6806#0 CATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTC 899
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 CATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGT- 565
consensus_6806#0 AATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 959
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 AATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 625
consensus_6806#0 GAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTT 1019
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 GAATCTAAGNNTAAGTGAGAACTT------------------------------------ 649
consensus_6806#0 AATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACA 1079
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 TCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGT 1139
consensus_6806#2 ------------------------------------------------------------
consensus_6806#1 ------------------------------------------------------------
consensus_6806#0 TTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT 1184
consensus_6806#2 ---------------------------------------------
consensus_6806#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||