cluster # 681

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Schistosoma mansoni
cluster # 681 cluster # 681 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_681#0 length = 393 sequences # 1

consensus_681#1 length = 194 sequences # 1

consensusID : consensus_681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [GGATAGTCCAGCCACTAAGGTTTAGACGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATAAACCGTGCTCCGGATTTTGGGGTACGGGGGTCGACA]

[+] EMBL CD060363             [GGATAGTCCAGCCACTAAGGTTTAGACGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATAAACCGTGCTCCGGATTTTGGGGTACGGGGGTCGACA]




>consensus_681#0
GGATAGTCCAGCCACTAAGGTTTAGACGTCGTGAGACAGGTTAGTTTTACCCTACTAATG
AGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGA
ACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTAC
CATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGT
ACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTG
GACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATAAAC
CGTGCTCCGGATTTTGGGGTACGGGGGTCGACA

consensusID : consensus_681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [ATGGACAATGCTGGTGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGTGTACGTAAGTAAGTAAGTAAGAATGAATCTCAGTTTGACGTACGTAGTATATTTTTCAGATCTTGGACATTTTATTTTGAGTAATTCCTGTATTGAACTTCCTCTATTTGATGTTTTAATATTCTCTTTCTAAGCTTGCCATAT]

[+] EMBL CD066821             [ATGGACAATGCTGGTGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGTGTACGTAAGTAAGTAAGTAAGAATGAATCTCAGTTTGACGTACGTAGTATATTTTTCAGATCTTGGACATTTTATTTTGAGTAATTCCTGTATTGAACTTCCTCTATTTGATGTTTTAATATTCTCTTTCTAAGCTTGCCATAT]




>consensus_681#1
ATGGACAATGCTGGTGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGTGTACGTAAGT
AAGTAAGTAAGAATGAATCTCAGTTTGACGTACGTAGTATATTTTTCAGATCTTGGACAT
TTTATTTTGAGTAATTCCTGTATTGAACTTCCTCTATTTGATGTTTTAATATTCTCTTTC
TAAGCTTGCCATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_681#0      GGATAGTCCAGCCACTAAGGTTTAGACGTCGTGAGACAGGTTAGTTTTACCCTACTAATG 60
consensus_681#1      ------------------------------------------------------------
                                                                                 

consensus_681#0      AGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGA 120
consensus_681#1      ------------------------------------------------------------
                                                                                 

consensus_681#0      ACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTAC 180
consensus_681#1      ATGGACAATGCTGGTGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGTGT-ACGTAAG 59
                     *  *    * * * * *  **  ****  *** * ***  **  *  ****  * *  * 

consensus_681#0      CATCTGAG--GGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACG 238
consensus_681#1      TAAGTAAGTAAGAATGAATCTCAGTTTGACGTACGTAGTATATTTTTCAGATCTTGGACA 119
                      *  * **   ** * *  ** *      *  *    * **    * ** ** *   ** 

consensus_681#0      GTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGAC 298
consensus_681#1      TTTTATTTTGAGT--AATTCCTGTATTGA-------ACTTCCTCTATTTGATGTTTTAAT 170
                      *  *** **  *   *  * **  * *        ** *  **  **** *** *  * 

consensus_681#0      TGGACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATAA 358
consensus_681#1      --ATTCTCTTTCTAAGCTTGCCATAT---------------------------------- 194
                          *   *  *  *** * *  **                                  

consensus_681#0      ACCGTGCTCCGGATTTTGGGGTACGGGGGTCGACA 393
consensus_681#1      -----------------------------------