cluster # 6810

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Schistosoma mansoni
cluster # 6810 cluster # 6810 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6810#0 length = 1024 sequences # 3

consensus_6810#1 length = 400 sequences # 1

consensusID : consensus_6810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1024
fasta sequence

                              [CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTGTTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACGTATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAGCTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACAAGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAAAAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATGTACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT]

[+] EMBL CD082671             [CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTT                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD184931             [                 tttgttacaAGAAACCAGAAGAATCGGGACAGATAGGTTTAATCTTTTGGTCAGATTATTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAACTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD076266             [                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTGTTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACGTATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAGCTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACAAGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAAAAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATGTACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT]




>consensus_6810#0
CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAAT
CTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAA
CTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAACGATATATTTGGA
TGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCGA
TGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAA
CTCTCAGATGACTCTCAAGAACGAATTGAGATCCTTGCTCATGAATACTGGGACAAGTTT
TATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTAT
GAATTATTTTCTTCGACATCTCCTAGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGG
AATACGATATTTCCAATATTACGCGCTATAAAGAGTCCTGGACTGTTGATATATGCATCA
GATTTCTCTGAAAAGGCTCTATCTATACTCAAAGAATCCAAAGGATATGATGCTGATCGT
TGTATTACTTTCCAGCATGATATAACCAAAACTAATGATGAAATCCCTTGTCCTAAAAAT
AGTTTGGATTTTCTAGTCTTAGTGTTCGTATTATCAGCAGTAAATCCTGAATTGTTTCAC
CGTACACTTAAAAATCTTGTTACGTATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGAT
TATGGAAGGTTTGATTTAGCTCAGCTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAAT
TTTTATATGAGATCAGATGGAACAAGGGTTTACTTTTTCACGCAAGATGAATTACACGAA
TTATTTACTGCTGTTGGTCTGGAAAAGATTCAGAACAAGGTTGATCGCAGATTAATTGTA
AATCGCAAAAAGAAGTTAAAGATGTACAGAATTTGGATTCAATGTAAATATAACAAGATA
TAAT

consensusID : consensus_6810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [GAGGCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGTAAGAATTATGATGAAAAGATCCAGCTTCTCTAGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGGGTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGCACATATATGAATGTAGTTGTGGTG]

[+] EMBL CD078209             [GAGGCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGTAAGAATTATGATGAAAAGATCCAGCTTCTCTAGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGAATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGGGTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGCACATATATGAATGTAGTTGTGGTG]




>consensus_6810#1
GAGGCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGTAAGAATTATG
ATGAAAAGATCCAGCTTCTCTAGGGATGACTTTCGATGGACAGAAGAGCAGGAAAATGTA
GCGAAAGAAATGATACTTTTGAATAGCACTGTTAAACTCTCAGATGACTCTCAAGGTTTT
TGGAAGCTACTGCTCACTTTTTATGTTTAGAACGAATTGAGATCCTTGCGCATGAATACT
GGGACAATTTTTATTCCCATCATGAAGATAGATTCTTCAAAGACAGAAATTGGTTAGAAA
AAGAGTTTTATGAATTATTTTCTTCGACATGTNGGGTTTTGACCCTTTTTTTAATTTTTT
TTAGCTCCTAGCGTGCACATATATGAATGTAGTTGTGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6810#0      CTCCGAGCCAAGATTCGGCACGAGGCAGAAACCAGAAGAATCGGGACAGATAGGTTTAAT 60
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      CTTTTGGTCAGATTAGTACCTTCATTTATCATTTGTTGCTGCATACTTGGCTCCTCAAAA 120
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      CTTTTCTTGTGTAACAAATCATTATAAATGGCTTCCAAAGATTGTAA-CGATATATTTGG 179
consensus_6810#1      ----------GAGGCGATATCTTACAGATG-CTTCCGATGTTTATGAGCGGAATGCTTGG 49
                                *   * *    *** * *** ***** * * ** * * **  **  ****

consensus_6810#0      ATGTCGATATCTTACAGATGCTTCCGATGTTTATGAGCGGAATGCTTGGGATGACTTTCG 239
consensus_6810#1      TAA--GAATTATGATGAAAAGATCCAGCTTCT------------CTAGGGATGACTTTCG 95
                           **  * * *   *    ***    * *            ** *************

consensus_6810#0      ATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAA 299
consensus_6810#1      ATGGACAGAAGAGCAGGAAAATGTAGCGAAAGAAATGATACTTTTGAATAGCACTGTTAA 155
                      ************************************************************

consensus_6810#0      ACTCTCAGATGACTCTCAAG-----------------------------------AACGA 324
consensus_6810#1      ACTCTCAGATGACTCTCAAGGTTTTTGGAAGCTACTGCTCACTTTTTATGTTTAGAACGA 215
                      ********************                                   *****

consensus_6810#0      ATTGAGATCCTTGCTCATGAATACTGGGACAAGTTTTATTCCCATCATGAAGATAGATTC 384
consensus_6810#1      ATTGAGATCCTTGCGCATGAATACTGGGACAATTTTTATTCCCATCATGAAGATAGATTC 275
                      ************** ***************** ***************************

consensus_6810#0      TTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATCTCCT 444
consensus_6810#1      TTCAAAGACAGAAATTGGTTAGAAAAAGAGTTTTATGAATTATTTTCTTCGACATGTNGG 335
                      ******************************************************* *   

consensus_6810#0      AGCGTGCACATAATGGAAGTAGGTTGTGGTGTGGGGAATACGATATTTCCAATATTACGC 504
consensus_6810#1      GTTTTGACCCTTTTTTTAATTTTTTTTAGCTCCTAGCGTGC-ACATATATGAATGTAGTT 394
                          **  * *  *   * *   ** * *      *  * * * ** *   *   **   

consensus_6810#0      GCTATAAAGAGTCCTGGACTGTTGATATATGCATCAGATTTCTCTGAAAAGGCTCTATCT 564
consensus_6810#1      GTGGTG------------------------------------------------------ 400
                      *   *                                                       

consensus_6810#0      ATACTCAAAGAATCCAAAGGATATGATGCTGATCGTTGTATTACTTTCCAGCATGATATA 624
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      ACCAAAACTAATGATGAAATCCCTTGTCCTAAAAATAGTTTGGATTTTCTAGTCTTAGTG 684
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      TTCGTATTATCAGCAGTAAATCCTGAATTGTTTCACCGTACACTTAAAAATCTTGTTACG 744
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      TATCTAAAACCCGGAGGTGTGCTATTGTTTCGAGATTATGGAAGGTTTGATTTAGCTCAG 804
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      CTAAGATTTAAAAATGGTCAGTGTTTAAAAGATAATTTTTATATGAGATCAGATGGAACA 864
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      AGGGTTTACTTTTTCACGCAAGATGAATTACACGAATTATTTACTGCTGTTGGTCTGGAA 924
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      AAGATTCAGAACAAGGTTGATCGCAGATTAATTGTAAATCGCAAAAAGAAGTTAAAGATG 984
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#0      TACAGAATTTGGATTCAATGTAAATATAACAAGATATAAT 1024
consensus_6810#1      ----------------------------------------