cluster # 6815

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Schistosoma mansoni
cluster # 6815 cluster # 6815 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6815#0 length = 1031 sequences # 3

consensus_6815#1 length = 206 sequences # 1

consensusID : consensus_6815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1031
fasta sequence

                              [TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGGATTTCGAAGGACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGCGATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGTATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTTAGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTTTCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTATACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAGTTATGAATAATCAA]

[+] EMBL CD083789             [TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGGATTTCGAAGGACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD082806             [                                                                  TGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATG                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD076398             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTCCTGATTTATTTTCACAGTCAAGTGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGCGATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGTATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTTAGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTTTCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTATACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAGTTATGAATAATCAA]




>consensus_6815#0
TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGGATTTCGAAGGA
CTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTGAT
CTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTG
TTATATAACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAAAGC
AAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGCGCT
GATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAATTG
TAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGAATC
TAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAGTGA
TCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGTACA
TAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCTATT
GTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCAATA
TACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGCGAT
TATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGTATT
TGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTTAGG
ATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTTTCT
ATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTATAC
TCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAGTTA
TGAATAATCAA

consensusID : consensus_6815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATGGTCATCAACATGTTCATGTTTTACCAGGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATANTAACCGAATCTGAATAAATNTCTATAGAGAAGTATCTGATC]

[+] EMBL CD077615             [AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATGGTCATCAACATGTTCATGTTTTACCAGGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATANTAACCGAATCTGAATAAATNTCTATAGAGAAGTATCTGATC]




>consensus_6815#1
AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATGGTCATCAACATGTTCA
TGTTTTACCAGGGATTGACGTGGTCGTAGCTAGTGTGATCTCTCGGATTGGCATTAAGTG
GATACGTGTTCCTATGGAATATATTCCAGAAACATCTTGTTATANTAACCGAATCTGAAT
AAATNTCTATAGAGAAGTATCTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6815#0      TGTACCAAGCTTACTGAAGTGATAATGGTTGTTTCCTTGGTAAGCATGG--ATTTCGAAG 58
consensus_6815#1      ----------------AATTCGGTCCGAGGGTTTCTGGAACTATTCCAGTCATTTCGATG 44
                                      ** *      *   *****       *     *  ******* *

consensus_6815#0      GACTTTGATGTTCTCTGGGATTAACATGAATGAAGGATTGACGTGGTCGTAGCTAGTGTG 118
consensus_6815#1      GTCATCAACATGTTCATGTTTTACCA-------GGGATTGACGTGGTCGTAGCTAGTGTG 97
                      * * *  *  *  **  *  *** **        **************************

consensus_6815#0      ATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCT 178
consensus_6815#1      ATCTCTCGGATTGGCATTAAGTGGATACGTGTTCCTATGGAATATATTCCAGAAACATCT 157
                      ************************************************************

consensus_6815#0      TGTTATAT-AACCGAATCTGAAATAAATTTCTATAGAGAAGTATCTGATCAAGCGATGAA 237
consensus_6815#1      TGTTATANTAACCGAATCTGAA-TAAATNTCTATAGAGAAGTATCTGATC---------- 206
                      *******  ************* ***** *********************          

consensus_6815#0      AGCAAAAGAAATATTTTCATCATATAGTTTAAAATATACTCAAAACTTCATTGGAATGGC 297
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      GCTGATGGGAAAAAATCAAACAATAGAATCATTGGATCAGTCTTTATCATCTTTTAACAA 357
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      TTGTAAGAATATTGAATTTATGGTTCATCCTGGTTATAGAACAAAAAAACATACCAATGA 417
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      ATCTAATAATCTTGAAGGTTGTGGAGATCCTGATGGTCCTGATTTATTTTCACAGTCAAG 477
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      TGATCGAGAACATGAAATGTTTTTTCTTACGAGTGATGAATTTAAAGACTATATAATGGT 537
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      ACATAACTACGAACTTTTGACATTTTCCGACTTATCATAAATCCATAGTTTATTTCCGCT 597
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      ATTGTTGTTACCGTTGAAACTATACTTCTTACTTCTTTATTAAAAAGAATAAAAGTATCA 657
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      ATATACAGTAGTAATACGCAATTCAAATTTTTGTCATGCTAACTACATTATTCAAGATGC 717
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      GATTATTCCATTTTGTGACTATATTTTCATTTTATCAATTTTAGACAAAATTGTTTGTGT 777
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      ATTTGTTTTAGACAGATCAGGAGTTATTTAGGACACAAAAATCCTTTTGAACTATAATTT 837
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      AGGATAACTGGATGATTGTGTAATTCGATTCTGTTGCATACTTTATATTATCTTAATTTT 897
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      TCTATAGATAATGATCATTCATTTTAATCCTTACTAATGTTTCGTAAAGGTGAATGTCTA 957
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      TACTCAAGCCCCTGTATTTGACTAACATGGAATGCTCAATGTTAGGACTCTAATGTTTAG 1017
consensus_6815#1      ------------------------------------------------------------
                                                                                  

consensus_6815#0      TTATGAATAATCAA 1031
consensus_6815#1      --------------