cluster # 6824

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Schistosoma mansoni
cluster # 6824 cluster # 6824 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6824#0 length = 790 sequences # 3

consensus_6824#1 length = 669 sequences # 1

consensusID : consensus_6824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 790
fasta sequence

                              [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG-TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG]

[+] EMBL CD076544             [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAAAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCA                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD082961             [                                                                                                                                                                                                                               TGGGAG AAATGTTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG]
[+] EMBL CD191136             [                                                                                                                                                                                                                                                                                                                                      TTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTT                                                                                                                                                                  ]




>consensus_6824#0
GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAAT
ATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAA
ACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTT
AAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATGTTGGG
TTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAA
CACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAG
TGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTAC
AGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTA
GGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAA
GAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAA
TCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCA
TCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCC
ATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTT
GGCCTCGTAG

consensusID : consensus_6824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA]

[+] EMBL CD076872             [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA]




>consensus_6824#1
TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAA
TAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA
AACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGT
TAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGT
GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA
ACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCAT
CAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCT
ACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCAC
TAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTA
AAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGG
ATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGT
CTTAAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6824#0      -GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAA 59
consensus_6824#1      TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAA 60
                       ******  ******* **** ******************** ****  *** * *****

consensus_6824#0      TATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 119
consensus_6824#1      TAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 120
                      ** ****** **************************************************

consensus_6824#0      AACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGT 179
consensus_6824#1      AACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGT 180
                      *********** ************************************** *********

consensus_6824#0      TAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATGTTGG 239
consensus_6824#1      TAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGT 240
                      ** ************** ********* ** **************************** 

consensus_6824#0      GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 299
consensus_6824#1      GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 300
                      ************************************************************

consensus_6824#0      ACACACACACACAC--CTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAG 357
consensus_6824#1      ACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCAT 360
                      **************  ***** ************************ **** ***  ** 

consensus_6824#0      CAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATC 417
consensus_6824#1      CAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATA-TC 419
                      *** ******** ***** ******* ****  ************************ **

consensus_6824#0      TACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCA 477
consensus_6824#1      TACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCA 479
                      *********************** ** ****************************** **

consensus_6824#0      CTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTT 537
consensus_6824#1      CTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTT 539
                      ******* **  ************ ********************* * ***********

consensus_6824#0      CAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAG 597
consensus_6824#1      AAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAG 599
                       *************  **************** *********** **** ** *******

consensus_6824#0      GAATCATGCAATAAATTAGGAAGGCGCACTTTATTAT-GGGATATAACGGTAAGTAATAA 656
consensus_6824#1      GA-TTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAG 658
                      ** * ***** ** **** * **** * ** ****** *********      *  * * 

consensus_6824#0      ACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTT 716
consensus_6824#1      GTCTTAAATAA------------------------------------------------- 669
                        * * * *                                                   

consensus_6824#0      AGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAAT 776
consensus_6824#1      ------------------------------------------------------------
                                                                                  

consensus_6824#0      TTTTGGCCTCGTAG 790
consensus_6824#1      --------------