These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 524 fasta sequence [AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCACTGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCAAATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCACGATGTTTCACTAGTAATTTAGCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATCCTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTGATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG] [+] EMBL CD188765 [AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCACTGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCAAATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCANATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCAT ] [+] EMBL CD187501 [ ATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCATATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCACGATGTTTCACTAGTAATTTAGCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATCCTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTGATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG] [-] EMBL CD189325 [ ACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAGTTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTACATA ] consensusID : consensus_6831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [GNCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTTAGACCACAGCAACAAATGTTTGTTTCTGTTCCAGAAGAAATTGTCACTCACTGGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATCTTATATACAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAATCTTAGACTATTTGGCTTCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGAACCTATGAGGGT] [+] EMBL CD060783 [GNCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTTAGACCACAGCAACAAATGTTTGTTTCTGTTCCAGAAGAAATTGTCACTCACTGGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATCTTATATACAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAATCTTAGACTATTTGGCTTCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGAACCTATGAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6831#0 AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCAC 60 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 TGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAG 120 consensus_6831#1 ------------------------------------------------------------ consensus_6831#0 TGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGA 180 consensus_6831#1 -------------------------------------------------GNCGACTCTAG 11 * ** consensus_6831#0 AGATATTGCATC-CAAATTGTTAAGCA-CATGCTGCCAACCACCACAGCTCCAAAACGTT 238 consensus_6831#1 AGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTT 71 ** ** * ** * ** * *** ** * * * ** * ** ** consensus_6831#0 TGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCT 298 consensus_6831#1 AGACCACAGCAA----CAAATGT-TTGTTTCTGTTCCAGA---AGAAATTGTCACTCACT 123 * **** *** ***** *** * ** * * **** * ** ** consensus_6831#0 TGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCA 358 consensus_6831#1 -GGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATC 182 * ** * * * ** *** ** * * ** * * ** consensus_6831#0 CGATGTTTCACTAGTAATTTA-GCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATC 417 consensus_6831#1 TTATATA-CAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAAT--- 238 ** * ** *** * * * * * ** * * * * * * * *** consensus_6831#0 CTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTG 477 consensus_6831#1 CTTAGACTATTTGGCT---TCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGA 295 *** *** *** * ** * * ** **** * ** * * * * * consensus_6831#0 ATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG 524 consensus_6831#1 ACCTATGAGGGT----------------------------------- 307 * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||