cluster # 6841

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Schistosoma mansoni
cluster # 6841 cluster # 6841 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6841#0 length = 683 sequences # 3

consensus_6841#1 length = 186 sequences # 1

consensusID : consensus_6841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTCTTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTCGCTAAAAATAAAATAAAAAAAAA]

[+] EMBL CD083228             [CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTCTTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGAC AAAAAACATGGCTGATACTNTCTGAAAAT ACATTTAACCTCNAATTCT                                                     ]
[-] EMBL CD076799             [                                                                     ACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGCCCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTT                                                    ]
[-] EMBL AI395000             [                                                                                                                                                                                                                                                                                                                                                                                                                                       tttcCAATCCTTCCTTTGGAAACGATTGAACCAGTTGACTTACTTTCGAAAACACTTGGATTATTCCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTCGCTAAAAATAAAATAAAAAAAAA]




>consensus_6841#0
CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTC
TTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTA
CAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAG
CCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAA
TACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAG
ACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATT
CTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCC
CTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTT
GGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAA
TGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACT
TTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTC
GCTAAAAATAAAATAAAAAAAAA

consensusID : consensus_6841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [ACTTACTTTCCAAAACACTTGTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAATGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAAATGGGAGATACTTTCTTAAAATAACATTTAACCTCAAATTCTTTTATAATTCATTACAG]

[-] EMBL AI977466             [ACTTACTTTCCAAAACACTTGTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAATGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAAATGGGAGATACTTTCTTAAAATAACATTTAACCTCAAATTCTTTTATAATTCATTACAG]




>consensus_6841#1
ACTTACTTTCCAAAACACTTGTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAG
AATTGTTTTCATGCTCAAAATGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGC
AAAAAAAATGGGAGATACTTTCTTAAAATAACATTTAACCTCAAATTCTTTTATAATTCA
TTACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6841#0      CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTC 60
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      TTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTA 120
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      CAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAG 180
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      CCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAA 240
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      TACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAG 300
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      ACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATT 360
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      CTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCC 420
consensus_6841#1      ------------------------------------------------------------
                                                                                  

consensus_6841#0      CTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTT 480
consensus_6841#1      ----------------------------------------ACTTACTTTCCAAAACACTT 20
                                                              ********** *********

consensus_6841#0      GGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAA 540
consensus_6841#1      GTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAA 80
                      * * ******************* ************************** ***** ***

consensus_6841#0      TGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACT 600
consensus_6841#1      TGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAA-ATGGGAGATACT 139
                      ******* ***************** ***********  ******** ****  ******

consensus_6841#0      TTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTC 660
consensus_6841#1      TTCTTAAAATAACATTTAACCTCAAATTCTTT-TATAATTCA--TTACAG---------- 186
                      **** *************************** **** ***   ****            

consensus_6841#0      GCTAAAAATAAAATAAAAAAAAA 683
consensus_6841#1      -----------------------