These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 927 fasta sequence [CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGCCAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCACTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAACAGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACAAAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG] [+] EMBL CD083237 [CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGCCAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCACTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAACAGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAG ] [-] EMBL CD076808 [ AATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACAAAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG] [+] EMBL CD145476 [ TGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTT ] consensusID : consensus_6842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACATCTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGCCAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCTTTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAATAGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC] [+] EMBL AI977524 [TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACATCTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGCCAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCTTTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAATAGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6842#0 ------------------------------------------------------------ consensus_6842#1 TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACAT 60 consensus_6842#0 ------------CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGC 48 consensus_6842#1 CTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGC 120 * **************** **************** **** consensus_6842#0 CAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAA 108 consensus_6842#1 CAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAA 180 *********************** ************************************ consensus_6842#0 ATGAATAATAATAAT---CCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCA 165 consensus_6842#1 ATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCT 240 *************** ***************************************** consensus_6842#0 CTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAAC 225 consensus_6842#1 TTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAAT 300 ***************************** **************************** consensus_6842#0 AGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCA 285 consensus_6842#1 AGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCA 360 ***************** ****************************************** consensus_6842#0 GTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGT 345 consensus_6842#1 GTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGT 420 **************************** ******************************* consensus_6842#0 GGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAA 405 consensus_6842#1 GGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC---------------- 464 ***** ********* ***** ********************** consensus_6842#0 GGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTA 465 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 AGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTA 525 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 GCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACA 585 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 GCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTT 645 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 CGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTT 705 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 CTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTAC 765 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 TGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGT 825 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 ATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACA 885 consensus_6842#1 ------------------------------------------------------------ consensus_6842#0 AAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG 927 consensus_6842#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||