cluster # 6842

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Schistosoma mansoni
cluster # 6842 cluster # 6842 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6842#0 length = 927 sequences # 3

consensus_6842#1 length = 464 sequences # 1

consensusID : consensus_6842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 927
fasta sequence

                              [CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGCCAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCACTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAACAGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACAAAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG]

[+] EMBL CD083237             [CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGCCAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCACTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAACAGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAG                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD076808             [                                                                                                                                                                                                                                                                                                                                                                                   AATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACAAAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG]
[+] EMBL CD145476             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTGTTATTTT                                                                                ]




>consensus_6842#0
CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGCCAACAACCAGGA
CATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAAT
AATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCACTAGATTTATTTACT
GGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAACAGAAATAGTTTTAGT
ATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTA
AGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGTGATTATCAT
TTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAAGGTATATTACAAAGT
GGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTAAGTCATGAAGAAGCA
ACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTAGCAAGAAGACAAACA
TGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACAGCTCCACAGAACAAC
AGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTTCGGTTTCAACTTACA
AATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTTCTATTACTGTATATC
ACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTACTGTCACTAATGTTGA
GAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGTATATGCTTTGATGTG
TTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACAAAAATCAAACTTGTT
CATATGAATTTAGTATAAATATATTAG

consensusID : consensus_6842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACATCTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGCCAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCTTTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAATAGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC]

[+] EMBL AI977524             [TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACATCTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGCCAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAAATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCTTTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAATAGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCAGTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGTGGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC]




>consensus_6842#1
TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACAT
CTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGC
CAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAA
ATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCT
TTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAAT
AGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCA
GTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGT
GGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6842#0      ------------------------------------------------------------
consensus_6842#1      TTAAATTTGAAAAATCAGTCCGCCAAAATAATAAGTATCATTTAAACAAATATCTTACAT 60
                                                                                  

consensus_6842#0      ------------CGGTACGAGGACTTAACAATGAATTTGTATTTTAGTTCAGTTGTTAGC 48
consensus_6842#1      CTATTTACATAATAAATAAACAACTTAACAATGAATTTATATTTTAGTTCAGTTGCTAGC 120
                                         *  **************** **************** ****

consensus_6842#0      CAACAACCAGGACATTCATCATTGTCTAAAATGAATACAAATACAAAACATACTAATCAA 108
consensus_6842#1      CAACAACCAGGACATTCATCATTATCTAAAATGAATACAAATACAAAACATACTAATCAA 180
                      *********************** ************************************

consensus_6842#0      ATGAATAATAATAAT---CCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCA 165
consensus_6842#1      ATGAATAATAATAATAATCCAACACATTCATGTAAACAACATGTAACATTGTCAAATGCT 240
                      ***************   ***************************************** 

consensus_6842#0      CTAGATTTATTTACTGGAAATAATATAACAGGTGGAAGTGTAGGAGGAATTGGTAGTAAC 225
consensus_6842#1      TTAGATTTATTTACTGGAAATAATATAACAAGTGGAAGTGTAGGAGGAATTGGTAGTAAT 300
                       ***************************** **************************** 

consensus_6842#0      AGAAATAGTTTTAGTATTGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCA 285
consensus_6842#1      AGAAATAGTTTTAGTATCGCTGGAAATAATCATTTGAAAAAATTAGAAGAGACAACACCA 360
                      ***************** ******************************************

consensus_6842#0      GTCAATATTGTATTAAGACGTGCATCTAGTGATTCACCATGGGGTTTTCGTGTTCAAGGT 345
consensus_6842#1      GTCAATATTGTATTAAGACGTGCATCTAATGATTCACCATGGGGTTTTCGTGTTCAAGGT 420
                      **************************** *******************************

consensus_6842#0      GGCAGTGATTATCATTTACAACTAACAATATGTAAAACACAATCTGGTAGTCCATCAGAA 405
consensus_6842#1      GGCAGGGATTATCATGTACAATTAACAATATGTAAAACACAATC---------------- 464
                      ***** ********* ***** **********************                

consensus_6842#0      GGTATATTACAAAGTGGTGATGAAATTTTATCAATTAATGGAGAAAATGCACGAATTTTA 465
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      AGTCATGAAGAAGCAACACAAAAAATTCGTTCTGCTGGTACTGATCTACAATTAACTGTA 525
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      GCAAGAAGACAAACATGTGATCTAAGTGATATTCGACCTAAAGGATTATTGAAATTCACA 585
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      GCTCCACAGAACAACAGACGTTAATTTGTTGTTTGTTTTGCCCAATGATGTAATCATTTT 645
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      CGGTTTCAACTTACAAATATTCTTCCTTTTTGTCTTCTTTTGTTTATTTCTTCAAATTTT 705
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      CTATTACTGTATATCACAGAATAACATAGATAAATGATAGTTTGAATTGTGTTTATTTAC 765
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      TGTCACTAATGTTGAGAATCATTGTTCATTATATTCATTGTTGTTAGTTTGTAAAAGGGT 825
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      ATATGCTTTGATGTGTTATTTTAATGTTATGACAACAGGAAACCCTATTAAAGATATACA 885
consensus_6842#1      ------------------------------------------------------------
                                                                                  

consensus_6842#0      AAAATCAAACTTGTTCATATGAATTTAGTATAAATATATTAG 927
consensus_6842#1      ------------------------------------------