These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTATATTAATATAAAAATGCTACANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAAAACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGAAAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGGAGGGATCA] [+] EMBL CD124025 [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTATATTAATATAAAAATGCTACANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAAAACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGAAAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGGAGGGATCA] consensusID : consensus_685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAATAATTTGCTACATTCAAGGAATAAGTACTACCTAGAAGTCAATGCTTTGAGGCCTGAAAATCTTTAGTTTGGGGATTAAATGCCTTTGAGTCAATCTTCTCTCTGAAAGGTAGATAAGGTACTATACAGAGAGCATACTTTGGATTCTTCAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGCAGGGATCA] [+] EMBL CD123920 [AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAATAATTTGCTACATTCAAGGAATAAGTACTACCTAGAAGTCAATGCTTTGAGGCCTGAAAATCTTTAGTTTGGGGATTAAATGCCTTTGAGTCAATCTTCTCTCTGAAAGGTAGATAAGGTACTATACAGAGAGCATACTTTGGATTCTTCAAAAAAAAAAAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGAGGCTGAGGTGGCAGGGATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_685#0 AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCT-ATATTAATATAAAAATGCTAC 59 consensus_685#1 AGGTTTCAGAGGAATTGAGAAGTAGATTCCCAAAAGCTCATATCAAT---AATTTGCTAC 57 ************************************** **** *** ** ****** consensus_685#0 ANTTCAAGNGAATANAGTACTACCTTANNNAAGTCAATGGTTTTTGGACGGACCTAGAAA 119 consensus_685#1 ATTC--AAGGAATAA-GTACTACCT---AGAAGTCAATGCTTTG-----AGGCCTGAAAA 106 * * * ***** ********* ********* *** * *** *** consensus_685#0 AACTCCACAGGTTGGGGAGAAAATGTAATATGCTTTTATGAGATCAATTCTTCTCTCTGA 179 consensus_685#1 ---TCTTTAGTTTGGGGATTAAA-------TGCCTTTGAG---TCAAT-CTTCTCTCTGA 152 ** ** ******* *** *** *** * ***** *********** consensus_685#0 AAGGTGGATAAAGTACGGTACTATCTCAAAGATGCTTCTTTTATTATTCTTAAAAAAAAA 239 consensus_685#1 AAGGTAGATAAGGTACTATAC------AGAGA-GCATACTTTGGATTCTTCAAAAAAAAA 205 ***** ***** **** *** * *** ** * *** * * ********* consensus_685#0 AAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGA 299 consensus_685#1 AAAAAAAAACAGATAAGGCTGGGTGTGGTGACACACACCTATAGTCCCAAACACACTGGA 265 ************************************************************ consensus_685#0 GGCTGAGGTGGGAGGGATCA 319 consensus_685#1 GGCTGAGGTGGCAGGGATCA 285 *********** ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||