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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 724 fasta sequence
[CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAACGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGTCGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAGAGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCATTGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGT-ACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCACTCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGTCCCATCCTTCACTACATTGTT-GGTGTTAGGATACTGCTTATATTT-CTTTAAAATCAAATATATT]
[+] EMBL CD077390 [CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAACGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGTCGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAGAGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCATTGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGT ACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCACAGAAATCATACTGAATGTTTATATCGATCTATTTATATTGATG ]
[+] EMBL SMAA28930 [ ACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGTAACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCACTCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGTCCCATCCTTCACTACATTGTT GGTGTTAGGATACTGCTTATATTT CTTTAAAATCAAATATAT ]
[+] EMBL SMAA28938 [ ACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGT T ACTGTGGAAGATTTAGTC AAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAG AATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATG TTCCTCTTTAATAATGCACTCTTTCATTTGATGT ACGCTCATATAAATATACTAGGATTAAGTTTGTCG AATTTTGT CCATCCTTCACTACA TGTTGGGTGTTAGGATACTGCTTATATTTCCTTTAAAATC AATATAat]
consensusID : consensus_6851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[GAAGCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAACACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTG]
[-] EMBL CD141213 [GAAGCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAACACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6851#0 CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAA 60
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGT 120
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAG 180
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 AGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCAT 240
consensus_6851#1 ---------------------------------------------------------GAA 3
*
consensus_6851#0 TGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAAT 300
consensus_6851#1 GCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAAT 63
* ** *************************************************
consensus_6851#0 ACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAAC 360
consensus_6851#1 ACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAAC 123
********************************** ************************
consensus_6851#0 ACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTA 420
consensus_6851#1 ACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTA 183
************************************************************
consensus_6851#0 GTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGAT 480
consensus_6851#1 GTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGAT 243
************************************************************
consensus_6851#0 GCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATT 540
consensus_6851#1 GCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATT 303
************************************************************
consensus_6851#0 TTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCAC 600
consensus_6851#1 TTTCCACCTAATTATCCCAAACATTTTAATTCTG-------------------------- 337
**********************************
consensus_6851#0 TCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGT 660
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CCCATCCTTCACTACATTGTTGGTGTTAGGATACTGCTTATATTTCTTTAAAATCAAATA 720
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 TATT 724
consensus_6851#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||