cluster # 6852

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Schistosoma mansoni
cluster # 6852 cluster # 6852 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6852#0 length = 369 sequences # 1

consensus_6852#1 length = 365 sequences # 2
consensus_6852#2 length = 303 sequences # 1

consensusID : consensus_6852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TACACAATTCACACCAGTTTACAGGCATGATCAATTTGATCTATAAAGCAACATTAGATGTAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAGTTTATTTATGTGACATGTGTCACGGTAATCCAATACAGGGAACTTGTTATTTTTTACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGACGAATGATTGATAATTATCTACAACAAGAGAAAGTCAAATTAAAACAGAGAGCACGAAACAACAAAACAAGGATTATCAAAATATGTCCATCAGGTTTACCACTGTTCATGTTAGATATTGTTCAA]

[+] EMBL CD120063             [TACACAATTCACACCAGTTTACAGGCATGATCAATTTGATCTATAAAGCAACATTAGATGTAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAGTTTATTTATGTGACATGTGTCACGGTAATCCAATACAGGGAACTTGTTATTTTTTACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGACGAATGATTGATAATTATCTACAACAAGAGAAAGTCAAATTAAAACAGAGAGCACGAAACAACAAAACAAGGATTATCAAAATATGTCCATCAGGTTTACCACTGTTCATGTTAGATATTGTTCAA]




>consensus_6852#0
TACACAATTCACACCAGTTTACAGGCATGATCAATTTGATCTATAAAGCAACATTAGATG
TAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTA
TGTAGTTTATTTATGTGACATGTGTCACGGTAATCCAATACAGGGAACTTGTTATTTTTT
ACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCA
CGACGAATGATTGATAATTATCTACAACAAGAGAAAGTCAAATTAAAACAGAGAGCACGA
AACAACAAAACAAGGATTATCAAAATATGTCCATCAGGTTTACCACTGTTCATGTTAGAT
ATTGTTCAA

consensusID : consensus_6852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence

                              [TTGATTGTTATTCAAATAAATAATAATAATAATATATTCTAAAAATAATAATAATTACATAATTCACATCAGTTTACAGGCATGATCAATTTGATCTATATAGCAACATTAGATGTAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAGTTTATTTATGACATGTATCACGGTAATCCAATACAAGGGAACTTGTTATTTTTTTTACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGACGAATGATTGATAATTATCTACAACTTGCAATCGTAACGCAGGCTTCAAACGTAACTGCCGAATTC]

[+] EMBL CD185912             [TTGATTGTTATTCAAATAAATAATAATAATAATATATTCTAAAAATAATAATAATTACATAATTCACATCAGTTTACAGGCATGATCAATTTGATCTATATAGCAACATTAGATGTAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAGTTTATTTATGACATGTATCACGGTAATCCAATACAAGGGAACTTGTTATTTTTTTTACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGACGAATGATTGATAATTATCTACAACTTGCAATCGTAACGCAGGCTTCAAACGTAAC          ]
[-] EMBL CD077418             [                                                                                                 ATATAGCNACATTAGATGTAGAGAACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGATCAGTAATTGTTTATGTAGTTTATTTATGACATGTATCACGGTAATCCAATACAAGGGAACTTGTCA TTTTTTTACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGACGAATGATTGATAATTGTCTACAACCTGCAATTGTAACGCAGGCTTCAAACCCTCGTGCCGAATTC]




>consensus_6852#1
TTGATTGTTATTCAAATAAATAATAATAATAATATATTCTAAAAATAATAATAATTACAT
AATTCACATCAGTTTACAGGCATGATCAATTTGATCTATATAGCAACATTAGATGTAGAG
AACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAG
TTTATTTATGACATGTATCACGGTAATCCAATACAAGGGAACTTGTTATTTTTTTTACTT
AAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGAC
GAATGATTGATAATTATCTACAACTTGCAATCGTAACGCAGGCTTCAAACGTAACTGCCG
AATTC

consensusID : consensus_6852#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TAGTNTNTGNNCCAAATAATAATAATTACACAATTCACACCAGTTTACAGACATGNNCAATTTGNNCTATATAGCAACATTAGATGTAGAGAAAAACCATCGGACACAGGGGATTNTTTTCAGTTTACTACTTCAGTAATTGTTTATGGCGTTTATTTATGACATGTATCACGGTAATCCAGCAAGGNTCTTGTTATTTTTCACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGGCGGATGATTGATAATTACCTTCAACTAGNGAAAGTCAA]

[+] EMBL AA999266             [TAGTNTNTGNNCCAAATAATAATAATTACACAATTCACACCAGTTTACAGACATGNNCAATTTGNNCTATATAGCAACATTAGATGTAGAGAAAAACCATCGGACACAGGGGATTNTTTTCAGTTTACTACTTCAGTAATTGTTTATGGCGTTTATTTATGACATGTATCACGGTAATCCAGCAAGGNTCTTGTTATTTTTCACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACGGCGGATGATTGATAATTACCTTCAACTAGNGAAAGTCAA]




>consensus_6852#2
TAGTNTNTGNNCCAAATAATAATAATTACACAATTCACACCAGTTTACAGACATGNNCAA
TTTGNNCTATATAGCAACATTAGATGTAGAGAAAAACCATCGGACACAGGGGATTNTTTT
CAGTTTACTACTTCAGTAATTGTTTATGGCGTTTATTTATGACATGTATCACGGTAATCC
AGCAAGGNTCTTGTTATTTTTCACTTAAGTGGATAGACTGATGATTTATGAACGGTGTTG
TTTAAGGTTATTCCCAAGGCCACGGCGGATGATTGATAATTACCTTCAACTAGNGAAAGT
CAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6852#1      TTGATTGTTATTCAAATAAATAATAATAATAATATATTCTAAAAATAATAATAATTACAT 60
consensus_6852#2      -----------------------------TAGTNTNTGNNCCAAATAATAATAATTACAC 31
consensus_6852#0      -------------------------------------------------------TACAC 5
                                                                             **** 

consensus_6852#1      AATTCACATCAGTTTACAGGCATGATCAATTTGATCTATATAGCAACATTAGATGTAGAG 120
consensus_6852#2      AATTCACACCAGTTTACAGACATGNNCAATTTGNNCTATATAGCAACATTAGATGTAGAG 91
consensus_6852#0      AATTCACACCAGTTTACAGGCATGATCAATTTGATCTATAAAGCAACATTAGATGTAGAG 65
                      ******** ********** ****  *******  ***** *******************

consensus_6852#1      AACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAG 180
consensus_6852#2      AAAAACCATCGGACACAGGGGATTNTTTTCAGTTTACTACTTCAGTAATTGTTTATGGCG 151
consensus_6852#0      AACAAACATGAGACACAGGAGATTGTTTTCAGTTTACTAGTTCAGTAATTGTTTATGTAG 125
                      ** ** ***  ******** **** ************** *****************  *

consensus_6852#1      TTTATTTATG--ACATGTATCACGGTAATCCAATACAAGGGAACTTGTTATTTTTTTTAC 238
consensus_6852#2      TTTATTTATG--ACATGTATCACGGTAATCCAGCA---AGGNTCTTGTTATTTTTC--AC 204
consensus_6852#0      TTTATTTATGTGACATGTGTCACGGTAATCCAATACA-GGGAACTTGTTATTTTTT--AC 182
                      **********  ****** *************  *    **  ************   **

consensus_6852#1      TTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACG 298
consensus_6852#2      TTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACG 264
consensus_6852#0      TTAAGTGGATAGACTGATGATTTATGAACGGTGTTGTTTAAGGTTATTCCCAAGGCCACG 242
                      ************************************************************

consensus_6852#1      ACGAATGATTGATAATTATCTACAACTTGCAATCGTAACGCAGGCTTCAA----ACGTAA 354
consensus_6852#2      GCGGATGATTGATAATTACCTTCAACTAGNGAAAGTCAA--------------------- 303
consensus_6852#0      ACGAATGATTGATAATTATCTACAACAAGAGAAAGTCAAATTAAAACAGAGAGCACGAAA 302
                       ** ************** ** ****  *  *  ** *                      

consensus_6852#1      CTGCCGAATTC------------------------------------------------- 365
consensus_6852#2      ------------------------------------------------------------
consensus_6852#0      CAACAAAACAAGGATTATCAAAATATGTCCATCAGGTTTACCACTGTTCATGTTAGATAT 362
                                                                                  

consensus_6852#1      -------
consensus_6852#2      -------
consensus_6852#0      TGTTCAA 369