cluster # 6858

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Schistosoma mansoni
cluster # 6858 cluster # 6858 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6858#0 length = 754 sequences # 2

consensus_6858#1 length = 320 sequences # 1
consensus_6858#2 length = 225 sequences # 1

consensusID : consensus_6858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 754
fasta sequence

                              [CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATTAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGATATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCTGATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGTACAGAAATAACATTTATGGTCTATATTTCAATTG]

[+] EMBL CD081141             [CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATTAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGATATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCTGATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGTACAGAAATAACATTTATGGTCTATATTTCAATTG]
[+] EMBL CD189030             [                   attgtctAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGTTCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTACATTATGGAATCAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCT                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_6858#0
CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAA
CTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATAC
GTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGT
TTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATT
AAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAG
TCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTC
TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA
AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCT
GAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATG
TTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGAT
ATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCT
GATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGT
ACAGAAATAACATTTATGGTCTATATTTCAATTG

consensusID : consensus_6858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [TCGGCACGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTGATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTG]

[+] EMBL CD077594             [TCGGCACGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTGATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTG]




>consensus_6858#1
TCGGCACGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTC
GTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGAT
ATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG
ATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAAC
ATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGT
GTCCGCAAAATATATGCTTG

consensusID : consensus_6858#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG]

[-] EMBL CD164115             [GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG]




>consensus_6858#2
GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAGTCTCTTCTG
CGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTCTCAAAATTT
CTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCA
AGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6858#0      CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAA 60
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      CTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATAC 120
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      GTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGT 180
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      TTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATT 240
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      AAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAG 300
consensus_6858#2      ---------GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAG 51
consensus_6858#1      ------------------------------------------------------TCGGCA 6
                                                                            *  *  

consensus_6858#0      TCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTC 360
consensus_6858#2      TCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTC 111
consensus_6858#1      CGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTC 66
                           ******************************************** **********

consensus_6858#0      TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 420
consensus_6858#2      TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 171
consensus_6858#1      TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 126
                      ************************************************************

consensus_6858#0      AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCT 480
consensus_6858#2      AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAG-------TAGGGTTCAAAAAGTGTT 224
consensus_6858#1      AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAG-------TAGGGTTCAAAAAGTGTT 179
                      **********************************        * *  * ***  ***  *

consensus_6858#0      GAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATG 540
consensus_6858#2      G----------------------------------------------------------- 225
consensus_6858#1      GATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAA 239
                      *                                                           

consensus_6858#0      TTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGAT 600
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      CATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTG 299
                                                                                  

consensus_6858#0      ATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCT 660
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      TGTCCGCAAAATATATGCTTG--------------------------------------- 320
                                                                                  

consensus_6858#0      GATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGT 720
consensus_6858#2      ------------------------------------------------------------
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      ACAGAAATAACATTTATGGTCTATATTTCAATTG 754
consensus_6858#2      ----------------------------------
consensus_6858#1      ----------------------------------