These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATTAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGATATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCTGATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGTACAGAAATAACATTTATGGTCTATATTTCAATTG] [+] EMBL CD081141 [CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATTAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGATATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCTGATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGTACAGAAATAACATTTATGGTCTATATTTCAATTG] [+] EMBL CD189030 [ attgtctAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAACTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATACGTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGTTCCTGAGTATCAGCGTTTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTACATTATGGAATCAAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCT ] consensusID : consensus_6858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [TCGGCACGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTGATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTG] [+] EMBL CD077594 [TCGGCACGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTGATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTG] consensusID : consensus_6858#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG] [-] EMBL CD164115 [GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAGTCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTCTCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAAAATTTGGCAAGTGTATGGTCTCTATCTGGATGAAGTAGGGTTCAAAAAGTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6858#0 CTCCAGGCCAANAATTCGGCACGAGGAGTGGTATAGGCGCTGTTTATGTCTTAAATGCAA 60 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 CTAACGGTGAAGCCTCTGACGCGTGCTGAAAAAGTGGTTCAGGTGAATGATAATGCATAC 120 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 GTTTCAGATTTACTGTCTGCAGTGAAATGTGCATTTGATATTGATCCTGAGTATCAGCGT 180 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 TTAGTCTTTAAAGGATGTCCTTTATTAGACAAAGATAAGCCTCTACTAAATTATGGAATT 240 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 AAGGATGGAGACAGACTTACCTTACTAACAAAAATTACACCACAACGAAGTGACTTTGAG 300 consensus_6858#2 ---------GACAGACTTACCTTACTAACAAAAATTACTCCCCAACGAAGTGACTTTGAG 51 consensus_6858#1 ------------------------------------------------------TCGGCA 6 * * consensus_6858#0 TCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTC 360 consensus_6858#2 TCTCTTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGCCTTCGTGGTC 111 consensus_6858#1 CGAGGTCTGCGCAAGTATTTGGCTGAGAAACTTCCTGAAGTTAATCCAGACTTCGTGGTC 66 ******************************************** ********** consensus_6858#0 TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 420 consensus_6858#2 TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 171 consensus_6858#1 TCAAAATTTCTCCAGGCATTGTCTGTCAGATTAAATTCCATGAGTTTCAGTGATATTGAA 126 ************************************************************ consensus_6858#0 AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAAATTTTCTTTGTTTCCAACTAGTCCT 480 consensus_6858#2 AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAG-------TAGGGTTCAAAAAGTGTT 224 consensus_6858#1 AATTTGGCAAGTGTATGGTCTCTATCTGGATGAAG-------TAGGGTTCAAAAAGTGTT 179 ********************************** * * * *** *** * consensus_6858#0 GAATCTTGTACAATAAACATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATG 540 consensus_6858#2 G----------------------------------------------------------- 225 consensus_6858#1 GATACTATATATCCAAGAATTTTCTTTGTTTCCAACTAGTCCTGAATCTTGTACAATAAA 239 * consensus_6858#0 TTCTCGTACATGTAGTGTGTCCGCAAAATATATGCTTGGTGTAATAATTACTGTTACGAT 600 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 CATCAATCTCATGTAACTAAGTTATGTATGTATAAATTCAATGTTCTCGTACATGTAGTG 299 consensus_6858#0 ATGTCGCTGGTCATGGCATCAGCCCAACTGGTCGATCCATATATATATGTACCAAGTTCT 660 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 TGTCCGCAAAATATATGCTTG--------------------------------------- 320 consensus_6858#0 GATTTGTTAAAGATAAACTAGCCAGCAATAATTGATTTCTGTCCACTCGTTGTTTGCTGT 720 consensus_6858#2 ------------------------------------------------------------ consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 ACAGAAATAACATTTATGGTCTATATTTCAATTG 754 consensus_6858#2 ---------------------------------- consensus_6858#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||