cluster # 6866

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Schistosoma mansoni
cluster # 6866 cluster # 6866 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6866#0 length = 898 sequences # 3

consensus_6866#1 length = 497 sequences # 1

consensusID : consensus_6866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 898
fasta sequence

                              [AGATGGACCACATTATGTATGGTTTAAGAATTTACAAGCTGCTTATTACACCTTATGGACAGAAATCGATGCTGATCGATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCCAAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTCAAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATATGAGTCTTCTTCCTACAGTGAGTTCAACTGGTACTGAATTGCACCATTGTAATGAAGACAATGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAATTCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGAAGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAAAAAACTATATG-ATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAAACAACAAAGTCAAAAAGAAAGATACAATTTACCACAAATCCCATCACCTGCACCTTCTACACTTATTCGACTTTGGTTAAGTGAACTACAATCTANAAATCCTTTCCTTGATGATGCTGCATTAATTATTCGAGTCCCAGTAAATGTTGATCAGAGCCANAAATCTGAAAATAATAGTCGTGCTGGTGATGATTTACTTTTGAGAATCAGACAAAATATTAGGTATTAGTCGTATAGTTAGCGGACATTATTTGTGTAAAAAGTGGTTGCATTTGAGTAAACATATAGTATGTGAGGTGCAAAGGACCCTATGTGATACAGTTTCATCACTCAGTGAGGATTATCTCCGGGAGGGGGG]

[+] EMBL CD080086             [AGATGGACCACATTATGTATGGTTTAAGAATTTACAAGCTGCTTATTACACCTTATGGACAGAAATCGATGCTGATCGATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCCAAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTCAAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATATGAGTCTTCTTCCTACAGTGAGTTCAACTGGTACTGAATTGCACCATTGTAATGAAGACAATGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAATTCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGAAGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAAAAAACTATATGAATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAAACAACAAAGTCAAAAAGAAAGATACAATTTACCACAAATCCCATCACCTGCACCTTCTACACTTATTCGACTTTGGTTAAGTGAACTACAATCTANAAATCCTTTCCTTGATGATGCTGCATTAATTATTCGAGTCCCAGTAAATGTTGATCAGAGCCANAAATCTGAA                                                                                                                                                                                             ]
[+] EMBL AI739699             [                                                                                                                                                                                                                                                                                                                                                                                                   ACCATCGACTCTATGTCAACATGAACAAGGTGAAGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAAAAAACTATATG ATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAAACAACAAAGTCAAAAAGAGAGATACAATTTACCACAAATCCCATCACGTGCACCTTCTACACTTATTCGACTTTGGTTAAGTGAACTACAATCTAAAAATCCTTTCCTTGATGATGCTGCATTAA TATTCGGGTCCCAGTAAATGTTGATCAGAGCCA AAATCTGGAAATAATAGTCGTGCTGGTGATGATTTACTTTTGAGAATCAGACAAAATATTAGGTATTAGTCGTATAGTTAGCGGACATTATTTGTGTAAAAAGTGGTTGCATTTGAGTAAACATATAGTATGTGAGGTGCAAAGGACCCTATGTGATACAGTTTCATCACTCAGTGAGGATTATCTCCGGGAGGGGGG]
[+] EMBL CD077832             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           aAAATAAAACTATATG ATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAAACAACAAAGTCAAAAAGAAAGATACAATNTACCACAAATCCCATCACCTGCACCTTCTACACTTATTCGACT                                                                                                                                                                                                                                                                                              ]




>consensus_6866#0
AGATGGACCACATTATGTATGGTTTAAGAATTTACAAGCTGCTTATTACACCTTATGGAC
AGAAATCGATGCTGATCGATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCC
AAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTC
AAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATAT
GAGTCTTCTTCCTACAGTGAGTTCAACTGGTACTGAATTGCACCATTGTAATGAAGACAA
TGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAAT
TCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGA
AGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAA
AAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAA
ACAACAAAGTCAAAAAGAAAGATACAATTTACCACAAATCCCATCACCTGCACCTTCTAC
ACTTATTCGACTTTGGTTAAGTGAACTACAATCTANAAATCCTTTCCTTGATGATGCTGC
ATTAATTATTCGAGTCCCAGTAAATGTTGATCAGAGCCANAAATCTGAAAATAATAGTCG
TGCTGGTGATGATTTACTTTTGAGAATCAGACAAAATATTAGGTATTAGTCGTATAGTTA
GCGGACATTATTTGTGTAAAAAGTGGTTGCATTTGAGTAAACATATAGTATGTGAGGTGC
AAAGGACCCTATGTGATACAGTTTCATCACTCAGTGAGGATTATCTCCGGGAGGGGGG

consensusID : consensus_6866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [ANAATGCGGCACGAGGGCATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCCAAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTCAAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATATGAGTCTTCTTCCTACAGTGAGTTCAACTGGTCCTGAATTGCACCATTGTAATGAAGACAATGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAATTCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGAAGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAAAAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCANAAGATTGTAAACCACANAGTCAAAAAG]

[+] EMBL CD081465             [ANAATGCGGCACGAGGGCATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCCAAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTCAAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATATGAGTCTTCTTCCTACAGTGAGTTCAACTGGTCCTGAATTGCACCATTGTAATGAAGACAATGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAATTCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGAAGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAAAAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCANAAGATTGTAAACCACANAGTCAAAAAG]




>consensus_6866#1
ANAATGCGGCACGAGGGCATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCC
AAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTC
AAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATAT
GAGTCTTCTTCCTACAGTGAGTTCAACTGGTCCTGAATTGCACCATTGTAATGAAGACAA
TGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAAT
TCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGA
AGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAA
AAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCANAAGATTGTAA
ACCACANAGTCAAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6866#0      AGATGGACCACATTATGTATGGTTTAAGAATTTACAAGCTGCTTATTACACCTTATGGAC 60
consensus_6866#1      ------------------------------------------------------------
                                                                                  

consensus_6866#0      AGAAATCGATGCTGATCGATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCC 120
consensus_6866#1      ANAATGCGGCACGAGGGCATTAAAAAAAGAAATTAATGCTGTGAAAGTTAACCAAGCGCC 60
                      * **  **   *      ******************************************

consensus_6866#0      AAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTC 180
consensus_6866#1      AAAGCATAGTGCAGACGAACCATATAATCTTTCATTCTTCAACTATTCTAATGATACTTC 120
                      ************************************************************

consensus_6866#0      AAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATAT 240
consensus_6866#1      AAATATAGTGTTGAATAATTTGAATTCTCAAAATGAGAATCGCTCACTTTTTCCACATAT 180
                      ************************************************************

consensus_6866#0      GAGTCTTCTTCCTACAGTGAGTTCAACTGGTACTGAATTGCACCATTGTAATGAAGACAA 300
consensus_6866#1      GAGTCTTCTTCCTACAGTGAGTTCAACTGGTCCTGAATTGCACCATTGTAATGAAGACAA 240
                      ******************************* ****************************

consensus_6866#0      TGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAAT 360
consensus_6866#1      TGTTTCGACAAGATTTATAAGTAAATGTGAACCAGAATTCGATAAACGTTGGCTTTCAAT 300
                      ************************************************************

consensus_6866#0      TCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGA 420
consensus_6866#1      TCGTCAAAGTCATGTCTACAAATATTTACCATCCAATCTATGTCAACATGAACAAGGTGA 360
                      ************************************************************

consensus_6866#0      AGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAA 480
consensus_6866#1      AGGTACAATACTTGCTGTTGGAGTTGTTGTACCTAAACCAGATGCTTTGGATAATCAAAA 420
                      ************************************************************

consensus_6866#0      AAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCAAAAGATTGTAA 540
consensus_6866#1      AAAACTATATGATTGGGAAGTTTCTAACAGAATTCATCATACAGATTCANAAGATTGTAA 480
                      ************************************************* **********

consensus_6866#0      ACAACAAAGTCAAAAAGAAAGATACAATTTACCACAAATCCCATCACCTGCACCTTCTAC 600
consensus_6866#1      ACCACANAGTCAAAAAG------------------------------------------- 497
                      ** *** **********                                           

consensus_6866#0      ACTTATTCGACTTTGGTTAAGTGAACTACAATCTANAAATCCTTTCCTTGATGATGCTGC 660
consensus_6866#1      ------------------------------------------------------------
                                                                                  

consensus_6866#0      ATTAATTATTCGAGTCCCAGTAAATGTTGATCAGAGCCANAAATCTGAAAATAATAGTCG 720
consensus_6866#1      ------------------------------------------------------------
                                                                                  

consensus_6866#0      TGCTGGTGATGATTTACTTTTGAGAATCAGACAAAATATTAGGTATTAGTCGTATAGTTA 780
consensus_6866#1      ------------------------------------------------------------
                                                                                  

consensus_6866#0      GCGGACATTATTTGTGTAAAAAGTGGTTGCATTTGAGTAAACATATAGTATGTGAGGTGC 840
consensus_6866#1      ------------------------------------------------------------
                                                                                  

consensus_6866#0      AAAGGACCCTATGTGATACAGTTTCATCACTCAGTGAGGATTATCTCCGGGAGGGGGG 898
consensus_6866#1      ----------------------------------------------------------