cluster # 6870

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Schistosoma mansoni
cluster # 6870 cluster # 6870 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6870#0 length = 441 sequences # 3

consensus_6870#1 length = 272 sequences # 1

consensusID : consensus_6870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 441
fasta sequence

                              [CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAATGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTG-AATTTATTATGAAG-AATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT-GAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATAGC]

[+] EMBL CD153670             [CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAATGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTG AATTTATTATGAAG AATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT GA                                    ]
[+] EMBL AA559774             [                                                                                                                        TCACAGTGCAGAAAATTCAACGACTGNAATTTATTATAAAGNAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATNTTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAATGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCNCTGTTTCTACTATTGGAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATA  ]
[+] EMBL CD164803             [                                                                                                                                                                                                                                                     TGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT GAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATAGC]




>consensus_6870#0
CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAA
TGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCG
TCACAGTGCAGAAAATTCAACGACTGAATTTATTATGAAGAATGCATTAAAACTTCAAGA
TGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCA
TATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGC
CTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGA
AACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATTGAAGATGAAGAAGAGGA
AGCCGAAGCAAAAGAAATAGC

consensusID : consensus_6870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [AGGCCAAGNAATTCGTTCTCGAGGGCCAAATGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCT]

[+] EMBL CD077917             [AGGCCAAGNAATTCGTTCTCGAGGGCCAAATGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCT]




>consensus_6870#1
AGGCCAAGNAATTCGTTCTCGAGGGCCAAATGGAATAGAGAAGCAGTTTCGCAGGTACTG
CAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTGAATT
TATTATAAAGAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTT
ATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATT
ACTTGAAGCATTAGCTGCTGAGGCGGCTGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6870#0      CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAA 60
consensus_6870#1      ------------------------------AGGCCAAGNAATTCGTTCTCGAGGGCCAAA 30
                                                    *  *     ****  *   **  *******

consensus_6870#0      TGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCG 120
consensus_6870#1      TGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCG 90
                      ********* **************************************************

consensus_6870#0      TCACAGTGCAGAAAATTCAACGACTGAATTTATTATGAAGAATGCATTAAAACTTCAAGA 180
consensus_6870#1      TCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGA 150
                      ************************************ ***********************

consensus_6870#0      TGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCA 240
consensus_6870#1      TGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCA 210
                      ************************************************************

consensus_6870#0      TATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGC 300
consensus_6870#1      TATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGC 270
                      ************************************************************

consensus_6870#0      CTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGA 360
consensus_6870#1      CT---------------------------------------------------------- 272
                      **                                                          

consensus_6870#0      AACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATTGAAGATGAAGAAGAGGA 420
consensus_6870#1      ------------------------------------------------------------
                                                                                  

consensus_6870#0      AGCCGAAGCAAAAGAAATAGC 441
consensus_6870#1      ---------------------