These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 441 fasta sequence [CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAATGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTG-AATTTATTATGAAG-AATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT-GAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATAGC] [+] EMBL CD153670 [CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAATGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTG AATTTATTATGAAG AATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT GA ] [+] EMBL AA559774 [ TCACAGTGCAGAAAATTCAACGACTGNAATTTATTATAAAGNAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATNTTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAATGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCNCTGTTTCTACTATTGGAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATA ] [+] EMBL CD164803 [ TGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGAAACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATT GAAGATGAAGAAGAGGAAGCCGAAGCAAAAGAAATAGC] consensusID : consensus_6870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AGGCCAAGNAATTCGTTCTCGAGGGCCAAATGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCT] [+] EMBL CD077917 [AGGCCAAGNAATTCGTTCTCGAGGGCCAAATGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCGTCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGATGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCATATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6870#0 CGCTTCCTCAACAGCTACGGCTGTTAATCCACTCACTCCAATTTATATACGTTGGCCAAA 60 consensus_6870#1 ------------------------------AGGCCAAGNAATTCGTTCTCGAGGGCCAAA 30 * * **** * ** ******* consensus_6870#0 TGGAATAGATAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCG 120 consensus_6870#1 TGGAATAGAGAAGCAGTTTCGCAGGTACTGCAAAAGCTGTGGATTACCAATCTTTTATCG 90 ********* ************************************************** consensus_6870#0 TCACAGTGCAGAAAATTCAACGACTGAATTTATTATGAAGAATGCATTAAAACTTCAAGA 180 consensus_6870#1 TCACAGTGCAGAAAATTCAACGACTGAATTTATTATAAAGAATGCATTAAAACTTCAAGA 150 ************************************ *********************** consensus_6870#0 TGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCA 240 consensus_6870#1 TGATCAAGCTGCATTATCTGCATCTATGTTATGTCCGAAACGACCAACTGCTGCGAAGCA 210 ************************************************************ consensus_6870#0 TATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGC 300 consensus_6870#1 TATTGATGAAAGCTCTGCTAATGCCAGATTACTTGAAGCATTAGCTGCTGAGGCGGCTGC 270 ************************************************************ consensus_6870#0 CTTACAGCAAAGTGAAGCATCGAATAACGCCCCATTGCGCCGAAGTGTTCAACAACAAGA 360 consensus_6870#1 CT---------------------------------------------------------- 272 ** consensus_6870#0 AACTACTCAAGGCATTGATACCGCTGTCACTGTTTCTACTATTGAAGATGAAGAAGAGGA 420 consensus_6870#1 ------------------------------------------------------------ consensus_6870#0 AGCCGAAGCAAAAGAAATAGC 441 consensus_6870#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||