cluster # 6872

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Schistosoma mansoni
cluster # 6872 cluster # 6872 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6872#0 length = 882 sequences # 3

consensus_6872#1 length = 369 sequences # 1

consensusID : consensus_6872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 882
fasta sequence

                              [TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATGATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATTCGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTAGTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCCATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAAATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATGAAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA]

[-] EMBL CD184978             [TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATGATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATTCGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTAGTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCCATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD079102             [                                                                                                                                                                                                                                     CTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCAATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAAATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATGA                                         ]
[-] EMBL CD061088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA]




>consensus_6872#0
TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATG
ATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATT
CGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTA
GTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTAC
AAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAA
GAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTC
CATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACC
AAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAA
ATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAA
AGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAAC
ATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAA
AAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGA
ATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATC
AGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATG
AAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA

consensusID : consensus_6872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [ACGGCCCCCTGATATGTTCGCAGGCATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGT]

[+] EMBL CD060980             [ACGGCCCCCTGATATGTTCGCAGGCATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGT]




>consensus_6872#1
ACGGCCCCCTGATATGTTCGCAGGCATGAAGGGATAAAATACCCATGTAATCAATGTAAC
AAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATA
AAACATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCAC
ATAAAAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCT
TCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGT
AATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAAT
CATGAAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6872#0      TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATG 60
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      ATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATT 120
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      CGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTA 180
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      GTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTAC 240
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      AAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAA 300
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      GAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTC 360
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      CATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACC 420
consensus_6872#1      ------------------------------------------------------------
                                                                                  

consensus_6872#0      AAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAA 480
consensus_6872#1      -------------------------------------------------ACGGCCCCCTG 11
                                                                       *   *  *   

consensus_6872#0      ATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAA 540
consensus_6872#1      ATATGTTCGCAGG-------CATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAA 64
                      ***    *  *         ***************** **********************

consensus_6872#0      AGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAAC 600
consensus_6872#1      AGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAAC 124
                      ************************************************************

consensus_6872#0      ATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAA 660
consensus_6872#1      ATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAA 184
                      **************************** *******************************

consensus_6872#0      AAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGA 720
consensus_6872#1      AAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGA 244
                      ************** *********** *********************************

consensus_6872#0      ATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATC 780
consensus_6872#1      ATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATC 304
                      ************************************************************

consensus_6872#0      AGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATG 840
consensus_6872#1      AGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATG 364
                      *********************************** ************************

consensus_6872#0      AAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA 882
consensus_6872#1      AAGGT------------------------------------- 369
                      *****