cluster # 6875

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Schistosoma mansoni
cluster # 6875 cluster # 6875 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6875#0 length = 730 sequences # 1

consensus_6875#1 length = 408 sequences # 2
consensus_6875#2 length = 392 sequences # 1

consensusID : consensus_6875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 730
fasta sequence

                              [CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAATATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATCACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTGTGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGATTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCCTACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAATGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTCTTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATCTTTTTTTCTT]

[+] EMBL CD080248             [CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAATATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATCACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTGTGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGATTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCCTACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAATGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTCTTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATCTTTTTTTCTT]




>consensus_6875#0
CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG
ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG
ATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAA
TAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCA
GTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAAT
ATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATC
ACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTG
TGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGA
TTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCC
TACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAA
TGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTC
TTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATC
TTTTTTTCTT

consensusID : consensus_6875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 408
fasta sequence

                              [AGGCGCAGGAATTCGGCACGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAATAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGCTTATATATATGCATTCAACTAACTACTTA]

[+] EMBL CD078160             [AGGCGCAGGAATTCGGCACGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGA                                                                                                                                                                                                            ]
[+] EMBL CD138392             [                                                     ACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAATAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGCTTATATATATGCATTCAACTAACTACTTA]




>consensus_6875#1
AGGCGCAGGAATTCGGCACGAGGATCACCATCATCACCATCATCATCATCATCACCATAA
TAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATG
TAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGA
TGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTT
CAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAG
TAATAATACATAACCAATAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAG
TAGATCTTATTTCATCAGCTTATATATATGCATTCAACTAACTACTTA

consensusID : consensus_6875#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCACCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCAGCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGAGTAATTACCAATGC]

[-] EMBL CD156439             [CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCACCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCAGCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGAGTAATTACCAATGC]




>consensus_6875#2
CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCA
CCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCA
GCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATT
TGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGA
TAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGA
TTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAAT
AATGTCAACATTAAAAGAGTAATTACCAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6875#1      --------------------------------------AGGCGCAGGA-ATTCGG---CA 18
consensus_6875#2      CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCA 60
consensus_6875#0      ------------------------------------------------------------
                                                                                  

consensus_6875#1      CGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCA 78
consensus_6875#2      CCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCA 120
consensus_6875#0      ------------------------------------------------------------
                                                                                  

consensus_6875#1      ACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATT 138
consensus_6875#2      GCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATT 180
consensus_6875#0      ------------------------------------------------------------
                                                                                  

consensus_6875#1      TGAATCAAAACGTCATAT-ACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 197
consensus_6875#2      TGAATCAAAACGTCATAT-ACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 239
consensus_6875#0      CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 60
                       **  *** *      *  *  **************************************

consensus_6875#1      ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 257
consensus_6875#2      ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 299
consensus_6875#0      ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 120
                      ************************************************************

consensus_6875#1      ATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAA 317
consensus_6875#2      ATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAA 359
consensus_6875#0      ATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAA 180
                      *********************** ************** *** *****************

consensus_6875#1      TAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCA 377
consensus_6875#2      TAATGTCAACATTAAAAGAGTAATTACCAATGC--------------------------- 392
consensus_6875#0      TAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCA 240
                      **************  *** *************                           

consensus_6875#1      GCTTATATATATGCATTCAACTAACTACTTA----------------------------- 408
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      GTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAAT 300
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      ATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATC 360
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      ACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTG 420
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      TGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGA 480
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      TTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCC 540
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      TACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAA 600
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      TGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTC 660
                                                                                  

consensus_6875#1      ------------------------------------------------------------
consensus_6875#2      ------------------------------------------------------------
consensus_6875#0      TTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATC 720
                                                                                  

consensus_6875#1      ----------
consensus_6875#2      ----------
consensus_6875#0      TTTTTTTCTT 730