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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 726 fasta sequence
[GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC]
[+] EMBL CD078210 [GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGC ]
[+] EMBL CD136768 [ CTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGG ]
[+] EMBL CD169224 [ AGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC]
consensusID : consensus_6877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC]
[-] EMBL CD128895 [ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6877#0 GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGA 60
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 TCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGAC 120
consensus_6877#1 ------------------------------------------------------------
consensus_6877#0 TGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAA 180
consensus_6877#1 --------------------------------------------------------ACGA 4
** *
consensus_6877#0 ACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGA 240
consensus_6877#1 ATTTGAG--AAACATTCTCGCCTGGGTGATATT--GTAGTGAGTGCTGTGGCACGTTCAA 60
* * * ** ** ** * ** * *** * ** * * * *
consensus_6877#0 GGAACTGGCGCGTTTCTATCC--ACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGA 298
consensus_6877#1 GTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCAT---TCTGTATCAAATGGTG 117
* * ** *** * ** * *** * * * ** * ****
consensus_6877#0 TCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCAC 358
consensus_6877#1 TAGGAGACTCTATCTACATTTACTG-TGATCGATTGATTGAACCTCCAGAAGA------- 169
* * * * * *** ** ** * *** *** * * ****
consensus_6877#0 TTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTT 418
consensus_6877#1 -TGCAGT----TGATA-TGAAAAC-ACCAAGATTTG-------TCCTAAGAAAGTACGCT 215
* * ** **** **** ** * **** **** * * **** * *
consensus_6877#0 GACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAG 478
consensus_6877#1 G---CTCGAGATCCGACTT------TAGTGAACTGT-------GTAGAGAAAGTTCTTGA 259
* ** ** * *** *** * ***** ** ** *
consensus_6877#0 TGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTG 538
consensus_6877#1 TCGC-----TTCGAAGCAGCTCCAGAAAAATGTGA-ATGGGATC-AGATTTTAAAGACTG 312
* ** * * **** * * * ** * *** ** * * ** * ****
consensus_6877#0 CCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATA--TGC 596
consensus_6877#1 CTT-TGACTGTACTAGGCGGGGA-----GGATGATCCCATTGATTTTGCCCGACCGCCGC 366
* * *** * * * ** ** *** ** * * * * * **
consensus_6877#0 TTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAG 656
consensus_6877#1 CTGATACAGA---CAAACTAA-AACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAA 422
*** * * * * *** ** ** *** ** * * * * ** * *
consensus_6877#0 TTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTT 716
consensus_6877#1 TAGTATATGATGTNTGGTGAGC-------------------------------------- 444
* **** * * *
consensus_6877#0 ATTTTTCATC 726
consensus_6877#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||