cluster # 6879

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Schistosoma mansoni
cluster # 6879 cluster # 6879 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6879#0 length = 634 sequences # 2

consensus_6879#1 length = 483 sequences # 1
consensus_6879#2 length = 305 sequences # 1

consensusID : consensus_6879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 634
fasta sequence

                              [TGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGCTACTACTGAACTGCCAAAACACGATACTACTAAACAAAAGCCGAACAAATCTCTTATTAATGATAATGATGGAAATTAATTTCAATTTATCCCGGATAAGTATGTAACAAATTTACCACCTGTTAAACTTTCTGTATTTGCGAAAGAAGCTTTATCTCTCGCATTTAATTTATCCGTTGCATATGCCAAAATCTCTGATTTATCGATAGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGNTACTATTAATTCGATTTTGGATGAATTGCANACGTT]

[+] EMBL CD078280             [TGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGCTACTACTGAACTGCCAAAACACGATACTACTAAACAAAAGCCGAACAAATCTCTTATTAATGATAATGATGGAAATTAATTTCAATTTATCCCGGATAAGTATGTAACAAATTTACCACCTGTTAAACTTTCTGTATTTGCGAAAGAAGCTTTATCTCTCGCATTTAATTTATCCGTTGCATATGCCAAAATCTCTGATTTATCGATAGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGNTACTATTAATTCGATTTTGGATGAATTGCANACGTT]
[+] EMBL CD078364             [TGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGCTACTACTGAACTGCCAAAACACGATACTACTAAACAAAAGCCGAACAAATCTCTTATTAATGATAATGATGGAAATTAATTTCAATTTATCCCGGATAAGTATGTAACAAATTTACCACCTGTTAAACTTTCTGTATTTGCGAAAGAAGCTTTATCTCTCGCATTTAATTTATCCGTTGCATATGCCAAAATCTCTGATTTATCGATAGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCACAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAG AAAACTAGATTGTTATCAAACTAA                                                      ]




>consensus_6879#0
TGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGCTACTACTGAACTGCC
AAAACACGATACTACTAAACAAAAGCCGAACAAATCTCTTATTAATGATAATGATGGAAA
TTAATTTCAATTTATCCCGGATAAGTATGTAACAAATTTACCACCTGTTAAACTTTCTGT
ATTTGCGAAAGAAGCTTTATCTCTCGCATTTAATTTATCCGTTGCATATGCCAAAATCTC
TGATTTATCGATAGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCC
AACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGT
TCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACA
AAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAG
ATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATA
CGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGNTA
CTATTAATTCGATTTTGGATGAATTGCANACGTT

consensusID : consensus_6879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAGCTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTAACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACATTTCATCTACAAAC]

[-] EMBL CD137072             [AAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAGCTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTAACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACATTTCATCTACAAAC]




>consensus_6879#1
AAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGG
TTCTTTATTTGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCCAAC
TGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGTTCA
CGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACAAAA
CCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATG
CAAAAACAAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACG
AAATCGTGTCGAGAAAAGCTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTAACT
ATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACATTTCATCTACA
AAC

consensusID : consensus_6879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [CAAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTAACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACACTTCATCTACAAA]

[+] EMBL CD120194             [CAAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAGATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAATACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTAACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACACTTCATCTACAAA]




>consensus_6879#2
CAAATACACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTG
GTTCTTTATTTGATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTA
GATGCAAAAACAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAAT
ACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTA
ACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACACTTCATCT
ACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6879#0      TGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGGTTCTTTATTTGCTACTACTGAACTGCC 60
consensus_6879#1      ------------------------------------------------------------
consensus_6879#2      ------------------------------------------------------------
                                                                                  

consensus_6879#0      AAAACACGATACTACTAAACAAAAGCCGAACAAATCTCTTATTAATGATAATGATGGAAA 120
consensus_6879#1      ------------------------------------------------------------
consensus_6879#2      ------------------------------------------------------------
                                                                                  

consensus_6879#0      TTAATTTCAATTTATCCCGGATAAGTATGTAACAAATTTACCACCTGTTAAACTTTCTGT 180
consensus_6879#1      ------------------------------------------------------------
consensus_6879#2      ------------------------------------------------------------
                                                                                  

consensus_6879#0      ATTTGCGAAAGAAGCTTTATCTCTCGCATTTAATTTATCCGTTGCATATGCCAAAATCTC 240
consensus_6879#1      AAATAC-ACAGCCACTTACAATAAAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGA--TTG 57
consensus_6879#2      ------------------------------------------------------------
                                                                                  

consensus_6879#0      TGATTTATCGATAGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCC 300
consensus_6879#1      TGGTTCTTTATTTGATGCTCAATTCGAAAATATCTATGATCAATTCAACCCTCTGGTCCC 117
consensus_6879#2      ------------------------------------------------------------
                                                                                  

consensus_6879#0      AACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGT 360
consensus_6879#1      AACTGCTTTATATGAGCAACATTGGTTAAAGGTGAAATTGGTTGATATTGGCCACCACGT 177
consensus_6879#2      -------------------------------------------------------CAAAT 5
                                                                             **  *

consensus_6879#0      TCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACA 420
consensus_6879#1      TCACGGCTCTCAAATCAAATACAAGAATATTTTGACTGCTAAACATTTTGCTACCTTACA 237
consensus_6879#2      ACACAGC---CACTTACAATA-AAGAGTGCTGTTGGGTCTTCGGTTTTAGCGGATTGTGG 61
                       *** **   **  *  **** **** *  * *     **     *** **    *    

consensus_6879#0      AAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAG 480
consensus_6879#1      AAACCTCCAAAATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAG 297
consensus_6879#2      TTCTTTATTTGATGTCACGTTTGTCAGTTAACCACAAGTTAGAGACCATTGTATCATTAG 121
                           *     *************************************************

consensus_6879#0      ATGCAAAAACAAAA-GAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAAT 539
consensus_6879#1      ATGCAAAAACAAAAAGAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAAT 357
consensus_6879#2      ATGCAAAAACAAAA-GAACTGATTGTTCAAATTGAAAGTATCAGTAAAGGAATCCATAAT 180
                      ************** *********************************************

consensus_6879#0      ACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGNT 599
consensus_6879#1      ACGAAATCGTGTCGAGAAAAGCTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTA 417
consensus_6879#2      ACGAAATCGTGTCGAGAAAAACTAGATTGTTATCAAACTAAAGTTAGAGAGAATCTTGTA 240
                      ******************** *************************************  

consensus_6879#0      ACTATTAATTCGATTTTGGATGAATTGCANACGTT------------------------- 634
consensus_6879#1      ACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACATTTCATCT 477
consensus_6879#2      ACTATTAATTCGATTTTGGATGAATTGCAAACGTTTGGACGTGAAACAAACACTTCATCT 300
                      ***************************** *****                         

consensus_6879#0      ------
consensus_6879#1      ACAAAC 483
consensus_6879#2      ACAAA- 305