These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGAAAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTATCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATATAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATATTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATATGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAAGACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAGAGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACAACTAGTAAAAGAGATCATAAAGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGCACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAGTAAACTA] [+] EMBL CD079348 [GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGAAAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTATCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATATAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATATTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATATGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAAGACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAGAGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACAACTAGTAAAAGAGATCATAAAGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGCACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAGTAAACTA] consensusID : consensus_6900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence [CAACGACTATACTGACTTAATGGAGACACTACAGCTATTCAATACAGCCCATCCGTCTATTAACTTCTCATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAGAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT] [+] EMBL CD115442 [CAACGACTATACTGACTTAATGGAGACACTACAGCTATTCAATACAGCCCATCCGTCTATTAACTTCTCATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAGAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT] [+] EMBL CD115517 [ AACTT ACATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAAAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAAAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATTCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCC ] [-] EMBL CD166868 [ AAGGAGAAATATAAACAGGAAAACATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTAC AAAGGAACCTAATTAAGACATTACACTATAGAATCAAGACCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6900#0 GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGA 60 consensus_6900#1 ------------------------------------------------------------ consensus_6900#0 AAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTA 120 consensus_6900#1 ------------------------------------------------------------ consensus_6900#0 TCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATA 180 consensus_6900#1 ----------------------------CAACGACTAT-ACTGACTTAATGGAGACACTA 31 * * * *** * * * * ** * ** consensus_6900#0 TAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATA 240 consensus_6900#1 CAG------CTATTCAATACAGCCCATCCGTCTATTAACTTCT--CATGTGAGGAGGAAA 83 ** ** * ** * * ** * * *** * * ** * * consensus_6900#0 TTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATA 300 consensus_6900#1 ATGGAGGTAGGATCGCTTTTCTATATGTT-CTCCTTACAGAGAGAAAAGACGGTTCATTA 142 * * ** *** * * * * * * ** * * ** * * * * ** consensus_6900#0 TGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCT 360 consensus_6900#1 AG---GAGAAATATAAACAGGAAAAAATCGTGGACGG----GTCAGTATACTAACTTTCT 195 * ** ***** * * * **** ********** ******** consensus_6900#0 TAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAA 420 consensus_6900#1 TAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAA 255 ********************************************** ********** ** consensus_6900#0 GACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAG 480 consensus_6900#1 GACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAG 315 ************** ********* ** **************** *** * ********* consensus_6900#0 AGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACA--ACTAGTAAAAGAGATCATAA 538 consensus_6900#1 AGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAA 375 *************** ********* ************ **** ** ****** ***** consensus_6900#0 AGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGC 598 consensus_6900#1 AGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGC 435 ********* ********* * ** *********** ********** ****** ***** consensus_6900#0 ACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAG 658 consensus_6900#1 ACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGG 495 **** * ** *** *** **** **************** ************* * consensus_6900#0 TAAACTA----------------------------------------------------- 665 consensus_6900#1 TAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATT 555 ******* consensus_6900#0 ----------------------------------- consensus_6900#1 GCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT 590 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||