cluster # 6906

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Schistosoma mansoni
cluster # 6906 cluster # 6906 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6906#0 length = 906 sequences # 3

consensus_6906#1 length = 851 sequences # 1

consensusID : consensus_6906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 906
fasta sequence

                              [TGTTCCCCAGCAGAAGGTCGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTGCTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCCAATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCCTAGCGTTCAACGTAATATCCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGGTATTTATAAGGTTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACTGTATTGGTCATTAGGTCAAGCATTAGTTATTATTTTATTTGGAATTGGTCAAGTCATAGTTATGCGATCGTTCTTTTCATCTCAATCAAATCAACGATCTGCAAAGCCCATTCCCATGTCTACTCCACAACTGCATACAGTTGGTTNTTAATAATTNTTTTTCAACTGATCTCTTTTATCATCGAAATATAGAACTTCCTTCTGTATTGAAAGTTTCCTTTTGGAATATGTTCATGTGATATGTATGANCATGTGATTTTTTTTACTTATTTACATATTTCCTGGGGTTCTTATCCTTTTTTAAAAAAATATGGCATTTAATTTTGGAGCTTTGGATTGTTGAAAACAGACTCTTTTTTTAAAAATCC]

[+] EMBL CD079859             [TGTTCCCCAGCAGAAGGTCGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTGCTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCCAATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCCTAGCGTTCAACGTAATATCCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGGTATTTATAAGGTTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACTGTATTGGTCATTAGGTCAAGCATTAGTTATTATTTTATTTGGAATTGGTCAAGTCATAGTTATGCGATCGTTCTTTTCATCTCAATCAAATCAACGATCTGCAAAGCCCATTCCCATGTCTACTCCACAACTGCATACAGTTGGTTNTTAATAATTNTTTTTCAACTGATCTCTTTTATCATCGAAATATAGAACTTCCTTCTGTATTGAAAGTTTCCTTTTGGAATATGTTCATGTGATATGTATGANCATGTGATTTTTTTTACTTATTTACATATTTCCTGGGGTTCTTATCCTTTTTTAAAAAAATATGGCATTTAATTTTGGAGCTTTGGATTGTTGAAAACAGACTCTTTTTTTAAAAATCC]
[+] EMBL CD187622             [                                                                                                                               TTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCCTAGCGTTCAACGTAATATCCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGGTATTTATAAGGTTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATTATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACTGTATTGGTCATTAGGTCAAGCATTAGTTATTATTTTAT                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD154336             [                                                                                                                                                                                                                      AGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGGTATTTATAAGGTTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACTGTATTGGTCATTAGGTCAAGCATTAGTTATTATTTTATTTGGAATTGGTCAAGTCATAGTTATGCGATCGTTCTTTTCATCTCAATCAAATCAACGATCTGCAAA                                                                                                                                                                                                                                                                       ]




>consensus_6906#0
TGTTCCCCAGCAGAAGGTCGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTG
CTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCC
AATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCCTAGCGTTCAACGTAATAT
CCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAAT
CGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGGTATTTATA
AGGTTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGC
GCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTT
CAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAA
GTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACTGT
ATTGGTCATTAGGTCAAGCATTAGTTATTATTTTATTTGGAATTGGTCAAGTCATAGTTA
TGCGATCGTTCTTTTCATCTCAATCAAATCAACGATCTGCAAAGCCCATTCCCATGTCTA
CTCCACAACTGCATACAGTTGGTTNTTAATAATTNTTTTTCAACTGATCTCTTTTATCAT
CGAAATATAGAACTTCCTTCTGTATTGAAAGTTTCCTTTTGGAATATGTTCATGTGATAT
GTATGANCATGTGATTTTTTTTACTTATTTACATATTTCCTGGGGTTCTTATCCTTTTTT
AAAAAAATATGGCATTTAATTTTGGAGCTTTGGATTGTTGAAAACAGACTCTTTTTTTAA
AAATCC

consensusID : consensus_6906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 851
fasta sequence

                              [CGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTGCTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCCAATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCTTACCGTTCAACGTAATATCCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGNTNCAGTACACGGGTATTTATGAGGGNTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGGGTACTGTATTGGTCATTAGGTCAAGCATTANTTATTATTTAATTGGGAATTGGTCAAGTCATAGTTATTGCAATCGTTCTTTTCATTTAATTCAAATCAACCATCTGCAAAGCCCATTTCCATGTTTATTCCACAACTGCTACAGNTGGGTTTTAAAAATTTTTTTAACCGACCTTTTTACATTGAATTAAACTTCTTTTGTTTTAAAGTCCTTTGGAAATTCCCCGGAAATGAGACACGGGATTTTTTTATTTTTTACCATCCCGGGGGTTTTACTTTTTTAAAAAAATTTCTTTTTTTTTGCTCTTTTTGTTAAAAACAACTTTTTTTAAAA]

[+] EMBL CD080068             [CGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTGCTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCCAATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCTTACCGTTCAACGTAATATCCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGNTNCAGTACACGGGTATTTATGAGGGNTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGGGTACTGTATTGGTCATTAGGTCAAGCATTANTTATTATTTAATTGGGAATTGGTCAAGTCATAGTTATTGCAATCGTTCTTTTCATTTAATTCAAATCAACCATCTGCAAAGCCCATTTCCATGTTTATTCCACAACTGCTACAGNTGGGTTTTAAAAATTTTTTTAACCGACCTTTTTACATTGAATTAAACTTCTTTTGTTTTAAAGTCCTTTGGAAATTCCCCGGAAATGAGACACGGGATTTTTTTATTTTTTACCATCCCGGGGGTTTTACTTTTTTAAAAAAATTTCTTTTTTTTTGCTCTTTTTGTTAAAAACAACTTTTTTTAAAA]




>consensus_6906#1
CGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTGCTATCGTGCATCAGGCCT
CAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCCAATGTTTTTACGAAGAGT
TTTCTAAGGGTGATAGCTTTACCTTACCGTTCAACGTAATATCCGGTGGGAATTACGATG
TGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAATCGCTTCACCGTTCATCTT
CTGAAGAAGTCAATATCGATGNTNCAGTACACGGGTATTTATGAGGGNTTGCTTTAGTAA
TTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATGGCGCAATTCCAGTTTCAA
TCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGATTTCAGAGAGTTTATATAA
TCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGAAAGTCGTATACTTTTAGT
ACGATCTTATTCAAATGCCATTTTCCTTCATAACCGGGTACTGTATTGGTCATTAGGTCA
AGCATTANTTATTATTTAATTGGGAATTGGTCAAGTCATAGTTATTGCAATCGTTCTTTT
CATTTAATTCAAATCAACCATCTGCAAAGCCCATTTCCATGTTTATTCCACAACTGCTAC
AGNTGGGTTTTAAAAATTTTTTTAACCGACCTTTTTACATTGAATTAAACTTCTTTTGTT
TTAAAGTCCTTTGGAAATTCCCCGGAAATGAGACACGGGATTTTTTTATTTTTTACCATC
CCGGGGGTTTTACTTTTTTAAAAAAATTTCTTTTTTTTTGCTCTTTTTGTTAAAAACAAC
TTTTTTTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6906#0      TGTTCCCCAGCAGAAGGTCGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTG 60
consensus_6906#1      ------------------CGTATGACGTTATCGGGATGATTCTTGTTTTGTGTATCTTTG 42
                                        ******************************************

consensus_6906#0      CTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCC 120
consensus_6906#1      CTATCGTGCATCAGGCCTCAGGAAACTCATTGACTTTTGAGTTAGAAGACAGGTCTGGCC 102
                      ************************************************************

consensus_6906#0      AATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCCTAGCGTTCAACGTAATAT 180
consensus_6906#1      AATGTTTTTACGAAGAGTTTTCTAAGGGTGATAGCTTTACCTTACCGTTCAACGTAATAT 162
                      ***************************************** ** ***************

consensus_6906#0      CCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAAT 240
consensus_6906#1      CCGGTGGGAATTACGATGTGGACATGGTACTTAAAGATCCCAGCAAAAATGTCCTTAAAT 222
                      ************************************************************

consensus_6906#0      CGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGTTTCAGTAGACGG-TATTTAT 299
consensus_6906#1      CGCTTCACCGTTCATCTTCTGAAGAAGTCAATATCGATGNTNCAGTACACGGGTATTTAT 282
                      *************************************** * ***** **** *******

consensus_6906#0      AAGG-TTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATG 358
consensus_6906#1      GAGGGNTTGCTTTAGTAATTATTTCTCTTCTATATCTCACAAAATTGTGTCCATGACATG 342
                       ***  ******************************************************

consensus_6906#0      GCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGAT 418
consensus_6906#1      GCGCAATTCCAGTTTCAATCCTTCGGAAAGCACATCATCTTCAGATCACAGCACCCAGAT 402
                      ************************************************************

consensus_6906#0      TTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGA 478
consensus_6906#1      TTCAGAGAGTTTATATAATCTACACGCAACAGTTTCCAAGGCTCTAACTCAGCAGTTTGA 462
                      ************************************************************

consensus_6906#0      AAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGTGTACT 538
consensus_6906#1      AAGTCGTATACTTTTAGTACGATCTTATTCAAATGCCATTTTCCTTCATAACCGGGTACT 522
                      ****************************************************** *****

consensus_6906#0      GTATTGGTCATTAGGTCAAGCATTAGTTATTATTTTATTTGGAATTGGTCAAGTCATAGT 598
consensus_6906#1      GTATTGGTCATTAGGTCAAGCATTANTTATTATTTAATTGGGAATTGGTCAAGTCATAGT 582
                      ************************* ********* *** ********************

consensus_6906#0      TAT-GCGATCGTTCTTTTCATCTCAATCAAATCAACGATCTGCAAAGCCCATTCCCATGT 657
consensus_6906#1      TATTGCAATCGTTCTTTTCATTTAATTCAAATCAACCATCTGCAAAGCCCATTTCCATGT 642
                      *** ** ************** * * ********** **************** ******

consensus_6906#0      CTACTCCACAACTGCATACAGTTGGTTNTTAATAATTNTTTTTCAACTGATCTCTTTTAT 717
consensus_6906#1      TTATTCCACAACTGC-TACAGNTGGGTTTTAAAAATTTTTTT--AACCGACCTTTTTA-- 697
                       ** *********** ***** *** * **** **** ****  *** ** ** ***   

consensus_6906#0      CATCGAAATATAGAACTTCCTTCTGTATTGAAAGTTTCCTTTTGGAATATGTTCATGTGA 777
consensus_6906#1      CATTGAATTA---AACTTC-TTTTGTTTTAAAG----TCCTTTGGAA---ATTCCCCGGA 746
                      *** *** **   ****** ** *** ** **      * *******    ***    **

consensus_6906#0      TATGTATGANCATGTGATTTTTTTTACTTATTTACATATTTCCTGGGGTTCTTATCCTTT 837
consensus_6906#1      AATG---AGACACGGGATTTTTTTA--TTTTTTAC---CATCCCGGGGGTTTTA--CTTT 796
                       ***      ** * *********   ** *****     *** **** * ***  ****

consensus_6906#0      TTTAAAAAAATATGGCATTTAATTTTGGAGCTTTGGATTGTTGAAAACAGACTCTTTTTT 897
consensus_6906#1      TTTAAAAAAATTT----CTTTTTTTTTGCTCTTT---TTGTTAAAAACAA---CTTTTTT 846
                      *********** *     **  **** *  ****   ***** ******    *******

consensus_6906#0      TAAAAATCC 906
consensus_6906#1      TAAAA---- 851
                      *****