cluster # 6910

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Schistosoma mansoni
cluster # 6910 cluster # 6910 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6910#0 length = 421 sequences # 1

consensus_6910#1 length = 209 sequences # 3

consensusID : consensus_6910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTGAAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAATCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAACGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACTAGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAGCTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTCACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTTA]

[+] EMBL CD080013             [GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTGAAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAATCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAACGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACTAGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAGCTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTCACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTTA]




>consensus_6910#0
GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTG
AAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAA
TCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAA
CGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACT
AGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAG
CTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTC
ACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTT
A

consensusID : consensus_6910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 209
fasta sequence

                              [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAATAAAA]

[+] EMBL SMGSTA               [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAATAAAA]
[+] EMBL SMGST26              [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCCACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAA     ]
[+] EMBL AW017133             [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTNCAAAATAGATTAACAGTAAATCTGG                                         ]




>consensus_6910#1
CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAAT
CAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTAC
GTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAA
AAAGCCTGTTATATGTTTACTAAATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6910#0      GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTG 60
consensus_6910#1      ------------------------------------------------------------
                                                                                  

consensus_6910#0      AAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAA 120
consensus_6910#1      ------------------------------------------------------------
                                                                                  

consensus_6910#0      TCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAA 180
consensus_6910#1      CTTGAACGAGTTTCCAAAAT-TAGTTTCTTTCAA----AAAGTGTATTGAAGATTTACCA 55
                          *   * * *****  * **  *  **  **    * **  *  **     * ** *

consensus_6910#0      CGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACT 240
consensus_6910#1      C------AAATCAAGAACTACTTAAATTCTAGCAGGTACATA-AAATGGCCTCTGCAAGG 108
                      *      ** *  ** * *** *** *  **       **** * ** **       *  

consensus_6910#0      AGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAG 300
consensus_6910#1      TTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGG 168
                        *  *  **   **  *   *  *  *     *  * ** * *  **    * ** * *

consensus_6910#0      CTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTC 360
consensus_6910#1      -------TAAATAACATAAAAAGCCTGTTAT---ATGTTTACTAAATAAAA--------- 209
                             * * ** ***   *  * * ***    ***    ***** ** *         

consensus_6910#0      ACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTT 420
consensus_6910#1      ------------------------------------------------------------
                                                                                  

consensus_6910#0      A 421
consensus_6910#1      -