cluster # 6912

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Schistosoma mansoni
cluster # 6912 cluster # 6912 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6912#0 length = 737 sequences # 3

consensus_6912#1 length = 729 sequences # 1

consensusID : consensus_6912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 737
fasta sequence

                              [TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTCGATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATGGACCCGTACCAATGCCAGTTGGTGTTTCATATGGCTGCATGTCTATATCCCAATCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTCTTAGTGGGTCTAACTTCTCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGTTCAATTTTACTTTCATACTTTAACTGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTCGTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATCCTCAAAATTAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA]

[-] EMBL CD080072             [TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTCGATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATGGACCCGTACCAATGCCAGTTGGTGTTTCATATGGCTGCATGTCTATATCCCAATCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTCTTAGTGGGTCTAACTTCTCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGTTCAATTTTACTTTCATACTTTAACTGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTCGTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATCCTCAAAATTAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACA                               ]
[+] EMBL CD095454             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aGGGTGCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTGCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA]
[+] EMBL CD095453             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA]




>consensus_6912#0
TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCAC
TGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTC
GATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATG
GACCCGTACCAATGCCAGTTGGTGTTTCATATGGCTGCATGTCTATATCCCAATCGAAAG
ATGAGGGTTCGTCAAAAATCTCTTCTTTTCTTAGTGGGTCTAACTTCTCCCAAGTACGTT
GGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGTTCAATTTTACTTT
CATACTTTAACTGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTCGTCATGCAACGCCT
CGAAACGATCCCATTCTTCTGGGATATCATCTTCATCCTCAAAATTAACTGGGTCCGAAA
CTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGA
CGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTG
AACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAG
AGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACAGTCTTTGATCAGAC
TGAAAAAGTACTGAGTA

consensusID : consensus_6912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [TTAGNNATTTATTTTAAGCATAAAAGTGTAAAGATAAAATATAAAACTACGGACGAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAAANANAGTTATGACGGGTTTAAGTAACCACCAGATACAAAAGAAATACCCTCTTTAGATAGATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAGGTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCATCCCAGGATCATTACGTCTCAAAATACTGGGAGAAAAACCAAGTCCACTACGATGAGCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCTATTTTGCAGGATTTTGATTCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAATTGGCGCCCCGTAGTAACCAAGACCCTTCCGGACTCCGGGTGGAAGACTACCTTCACAAGTTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTCCGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTAAAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG]

[-] EMBL CD080534             [TTAGNNATTTATTTTAAGCATAAAAGTGTAAAGATAAAATATAAAACTACGGACGAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAAANANAGTTATGACGGGTTTAAGTAACCACCAGATACAAAAGAAATACCCTCTTTAGATAGATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAGGTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCATCCCAGGATCATTACGTCTCAAAATACTGGGAGAAAAACCAAGTCCACTACGATGAGCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCTATTTTGCAGGATTTTGATTCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAATTGGCGCCCCGTAGTAACCAAGACCCTTCCGGACTCCGGGTGGAAGACTACCTTCACAAGTTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTCCGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTAAAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG]




>consensus_6912#1
TTAGNNATTTATTTTAAGCATAAAAGTGTAAAGATAAAATATAAAACTACGGACGAATTA
TAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAAANANAG
TTATGACGGGTTTAAGTAACCACCAGATACAAAAGAAATACCCTCTTTAGATAGATTACT
GTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAGGTTTAGA
GGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCATCCCAGG
ATCATTACGTCTCAAAATACTGGGAGAAAAACCAAGTCCACTACGATGAGCAACAGTCTG
TGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCTATTTTGCAGGA
TTTTGATTCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAATTGGCGCCCCGTAGTA
ACCAAGACCCTTCCGGACTCCGGGTGGAAGACTACCTTCACAAGTTATAGGAACTTTTAT
CCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTCCGAGTCCAGTACCTGGAATCCAACC
CATACGTTTTAATAGTTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTAAAAAGGGC
GTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTCCTCGTGCCGAATTATTG
GCCTNCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6912#0      TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCAC 60
consensus_6912#1      --TTAGNNATTTATTT-TAAGCATAAAAGTGTA-AAGATAAAATATAA-AACTACGG-AC 54
                         * *      *    ** *  *** ****   *  ***   * *   **  **   **

consensus_6912#0      TGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTC 120
consensus_6912#1      GAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAA 114
                         *   **   *       **** * **  *  **      ***** **   * **   

consensus_6912#0      GATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATG 180
consensus_6912#1      ANANAGTTATGACGGGTTTAAGTA-ACCACCAGATACAAAAGAAATACCCTCTTTAGATA 173
                            *    *   *** *     * * * *  * **     **  ** * *  * ** 

consensus_6912#0      GACCCGTACCAATGC-CAGT----TGGTGTTTCATATGGCTGCATGTCTATATCCCAA-- 233
consensus_6912#1      GATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAG 233
                      **    *   * **  ***       **      * *   ** * **** *     **  

consensus_6912#0      --TCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTC---TTAGTGGGTCTAACTTC- 287
consensus_6912#1      GTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCA 293
                        *   * ***   ** *     **    ****** *     ***     * **    * 

consensus_6912#0      TCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGT 347
consensus_6912#1      TCCCAGGATCATTA--CGTCTCAAAATACTGGG--AGAAAAACCAAGTCCACTACGATGA 349
                      ***** *  * **   *       ** *** **  ***   ***   *   * *  * * 

consensus_6912#0      TCAATTTTACTTTCATACTTTAAC-TGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTC 406
consensus_6912#1      GCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCT 409
                       ***   *   *  * * *  ***      *   * *   * *  *   ***        

consensus_6912#0      GTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATC-CTCAAAAT 465
consensus_6912#1      ATTTTGCAGGATTTTGAT----TCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAAT 465
                       *  ****     * **     ****    *  *      *  *  * **  *   ****

consensus_6912#0      TAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAA 525
consensus_6912#1      TGGC---GCCCCGTAGTAA--CCAAGACCCTTCCGGAC--TCCGGGTGGAAGACTACCTT 518
                      *  *   * **   * ***  * ** **  * * ***   * ** *  *   * **    

consensus_6912#0      TATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCA 585
consensus_6912#1      CACAAG--TTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTC- 575
                       * ***  **  **        **   * ***  **  *    ***   *    *   * 

consensus_6912#0      CATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATA---TTTGC 642
consensus_6912#1      CGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGG 635
                      *   * **   **** * *  ***    *    * **  *     * *****   **** 

consensus_6912#0      GGATC--TTAGCTTGCGTAGAGAA-GTCCAAATTAAGCTTCGAAATAATTGAACTCTCCA 699
consensus_6912#1      TAATCACTTCACTGGTAAAAAGGGCGTATGGATTATG-TGCAAGGTC-TTGAACATGAAT 693
                        ***  **  ** *   * **   **    **** * * * *  *  ******      

consensus_6912#0      GTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA 737
consensus_6912#1      AGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG-- 729
                         * *  ** * *  * ** * *         ***