These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 868 fasta sequence [CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT] [+] EMBL CD080268 [CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCC ] [-] EMBL CD090994 [ GTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTG GATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAA GGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT] consensusID : consensus_6914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence [GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC] [-] EMBL CD115903 [GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCA ] [+] EMBL CD186647 [ CTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6914#0 ------------------------------------------------------------ consensus_6914#1 GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGG 60 consensus_6914#0 ---------------------------------CTCGNAGGCCAAAAATTCGGC-----A 22 consensus_6914#1 AATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAA 120 ** * ** *** * * consensus_6914#0 CGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 82 consensus_6914#1 AAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 180 ******************************************************* consensus_6914#0 TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 142 consensus_6914#1 TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 240 ************************************************************ consensus_6914#0 GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 202 consensus_6914#1 GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 300 ************************************************************ consensus_6914#0 ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCG 262 consensus_6914#1 ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCG 360 ********************************** ** *** ****************** consensus_6914#0 GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 322 consensus_6914#1 GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 420 ************************************************************ consensus_6914#0 GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAAT 382 consensus_6914#1 GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAAT 480 **************************************************** ******* consensus_6914#0 AATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTT 442 consensus_6914#1 TATGGAGCTTGTTTC--------------------------------------------- 495 ************** consensus_6914#0 TTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCT 502 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 GTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTG 562 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 GACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAAT 622 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 AAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGAT 682 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 AAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTT 742 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 ACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCC 802 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 TAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAG 862 consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 TTTATT 868 consensus_6914#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||