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Schistosoma mansoni
cluster # 6914 cluster # 6914       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6914#0 length = 868 sequences # 2  
consensus_6914#1 length = 495 sequences # 2  

consensusID : consensus_6914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 868
fasta sequence
                              [CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT]

[+] EMBL CD080268             [CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCC                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD090994             [                                                                                                                                                                                                                                                                                                                                                                                                        GTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTTTTCCCAGGTACTG GATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAA  GGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAGTTTATT]


>consensus_6914#0 CTCGNAGGCCAAAAATTCGGCACGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATC TGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATAT AATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGT ATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTT TGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAG ACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGAT GCGAGGAACTGCCTACATAAATAATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACA ACTACCGGGTGGCAATATTGTTTTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAG TTGCTTCAGGAAAGGGGAGCCTGTTGTATTCGGTAAACCACATAAACCCATGTTTGATCT ACTTTGCCAATGTTGCGAATTGGACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATA TACTGATATCGCATTTGGGAATAAATTTGGTTTACATACGATATGCGTCCTGACGGGTGT CACTAACCAAGCGTTAATTGATAAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACC AAAATATGTTTTGCAATCTGTTACGGACATTTTAAATATTTTGAAAGAATAAATCAACTG TTCTTTCCCTCTTGTTTACTCCTAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTA CCAGTGATCGTTCTCTAACTAGTTTATT



consensusID : consensus_6914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 495
fasta sequence
                              [GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC]

[-] EMBL CD115903             [GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGGAATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCA                                                                                                                                                        ]
[+] EMBL CD186647             [                                                                        CTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAAAAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAGTGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCTGCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGAATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCGGTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTTGTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAATTATGGAGCTTGTTTC]


>consensus_6914#1 GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGG AATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAA AAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCG GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAAT TATGGAGCTTGTTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6914#0      ------------------------------------------------------------
consensus_6914#1      GCTTCTGCGGTTCTGCGCATCTGTGAAACTTTCCTTTTTGACTGTGATGGTGTTATCTGG 60
                                                                                  

consensus_6914#0      ---------------------------------CTCGNAGGCCAAAAATTCGGC-----A 22
consensus_6914#1      AATTCTAACGTCCTTATTCCATCGGCTCAAGCGCTTATACAACATTTGCTCGACCACAAA 120
                                                       **   *   **     *** *     *

consensus_6914#0      CGAGGTGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 82
consensus_6914#1      AAGAATGTTTTTCTAATTACGAATAATAGCAGAAGATCTGTAAAAGAATACGTCTCCAAG 180
                           *******************************************************

consensus_6914#0      TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 142
consensus_6914#1      TGTCATGGCTTGGGACTTCCAGTATCGAAAAGAAATATAATATGTACAGCTCGTGTCGCT 240
                      ************************************************************

consensus_6914#0      GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 202
consensus_6914#1      GCCTGTTTTCTTCGGGAAAAAATATCTGATGGGGAAGTATATGTGGTCGGTGAGAGCGGA 300
                      ************************************************************

consensus_6914#0      ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCACTTTGGAATCGGACCTGACTTCCCG 262
consensus_6914#1      ATTAGCGCTGAATTAAATGAATCTGGAGTATCTCGCTATGGCATCGGACCTGACTTCCCG 360
                      ********************************** ** *** ******************

consensus_6914#0      GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 322
consensus_6914#1      GTCGACTCGTCTAATCCTCTTCATGGAGTGGAATTAAGACCAAACGTGAAAGCCGTCCTT 420
                      ************************************************************

consensus_6914#0      GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTACATAAAT 382
consensus_6914#1      GTTGGCTTTGATAGTCATTTTAATTACAGGAAACTGATGCGAGGAACTGCCTGCATAAAT 480
                      **************************************************** *******

consensus_6914#0      AATGGAGCTTGTTTCTACGCTACGAACGAAGATGCACAACTACCGGGTGGCAATATTGTT 442
consensus_6914#1      TATGGAGCTTGTTTC--------------------------------------------- 495
                       **************                                             

consensus_6914#0      TTCCCAGGTACTGNGATCCATCGTATCGGCTTTCAGAGTTGCTTCAGGAAAGGGGAGCCT 502
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      GTTGTATTCGGTAAACCACATAAACCCATGTTTGATCTACTTTGCCAATGTTGCGAATTG 562
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      GACCCTTCAAAAACTGTGATGGTTGGAGATAACTTATATACTGATATCGCATTTGGGAAT 622
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      AAATTTGGTTTACATACGATATGCGTCCTGACGGGTGTCACTAACCAAGCGTTAATTGAT 682
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      AAAGTAAACTGTTCGCCAGAAGATGAATTATTTCGACCAAAATATGTTTTGCAATCTGTT 742
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      ACGGACATTTTAAATATTTTGAAAGAATAAATCAACTGTTCTTTCCCTCTTGTTTACTCC 802
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      TAAAATATTTCGCCTTACTTCCTACGTATTTCCATTTACCAGTGATCGTTCTCTAACTAG 862
consensus_6914#1      ------------------------------------------------------------
                                                                                  

consensus_6914#0      TTTATT 868
consensus_6914#1      ------
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)